Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

Overview of Metabolism01:40

Overview of Metabolism

Living cells constantly carry out various chemical reactions which are necessary for their proper functioning. These reactions are interlinked to one another via multiple pathways. The collection of these chemical reactions is known as metabolism.
Plant Metabolism
Sunlight, the primary source of energy in plants, is first absorbed by the chlorophyll pigments present in their leaves. Plants then use this energy to carry out photosynthesis, where water is oxidized into oxygen and carbon dioxide...

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

The recount3 Python package for programmatic access to uniformly processed RNA-seq data.

bioRxiv : the preprint server for biology·2026
Same author

Chemical Structure Representation Standardization Is Needed to Generalize Metabolite-Pathway Involvement Prediction Across KEGG, Reactome, and MetaCyc Knowledgebases.

Metabolites·2026
Same author

Information-Content-Informed Kendall-Tau Correlation Methodology: Interpreting Missing Values in Metabolomics as Potentially Useful Information.

Metabolites·2026
Same author

FASN Inhibition Enhances the Efficacy of Chemotherapy in Colorectal Cancer by Inhibiting the DNA Damage Response.

Cancer research·2026
Same author

A Major Update and Improved Validation Functionality in the mwtab Python Library and the Metabolomics Workbench File Status Website.

Metabolites·2026
Same author

High-Quality Predicted Pathway Annotations Greatly Improve Pathway Enrichment Analysis of Metabolomics Datasets.

bioRxiv : the preprint server for biology·2025

相关实验视频

Updated: Jun 30, 2026

Using the Open-Source MALDI TOF-MS IDBac Pipeline for Analysis of Microbial Protein and Specialized Metabolite Data
09:29

Using the Open-Source MALDI TOF-MS IDBac Pipeline for Analysis of Microbial Protein and Specialized Metabolite Data

Published on: May 15, 2019

20.3K

在mwtab Python库和Metabolomics工作台文件状态网站中的重大更新和改进的验证功能.

P Travis Thompson, Hunter N B Moseley

    bioRxiv : the preprint server for biology
    |January 9, 2026
    PubMed
    概括

    代谢学工作台 (MW) Python包 (mwtab) 已更新至2.0.0版本,增强了代谢学数据集的数据验证和解析. 这提高了MW存储库中的数据的策划性,公平性和可重复使用性,用于元分析.

    科学领域:

    • 代谢学 代谢学 代谢学
    • 生物信息学是一种生物信息学.
    • 数据科学数据科学数据科学

    背景情况:

    • 代谢学工作台 (MW) 是代谢学数据的公共存储库,使用质谱 (MS) 和核磁共振 (NMR).
    • 自2024年4月以来,MW的数据集增加了50%,需要基础设施和格式更新.
    • mwTab文件格式和网络基础设施已经经历了持续的演变,以管理这种不断扩大的数据量.

    研究的目的:

    • 更新 mwtab Python 包,以增强 Metabolomics 工作台的数据处理和验证.
    • 改善MW存储库内的代谢学数据集的策划,公平性和可重复使用性.
    • 通过提高数据质量和可访问性,促进在元分析中使用MW数据集.

    主要方法:

    • 更新了mwtab Python包,改善了批处理的错误处理和增强的解析功能.
    • 在mwtab包中对验证功能进行了广泛的改进.
    • 利用增强的验证功能来评估MW存储库中所有可用的数据集.

    主要成果:

    • 已经发布了mwtab Python包的2.0.0版本,提供了强大的数据验证和解析.
    • 该mWFileStatus网站已经更新到2.0.0版本,以补充包的改进.

    更多相关视频

    An Integrated Workflow of Identification and Quantification on FDR Control-Based Untargeted Metabolome
    05:35

    An Integrated Workflow of Identification and Quantification on FDR Control-Based Untargeted Metabolome

    Published on: September 20, 2022

    4.2K
    A Clinical Metaproteomics Workflow Implemented within Galaxy Bioinformatics Platform to Analyze Host-Microbiome Interactions Underlying Human Disease
    09:52

    A Clinical Metaproteomics Workflow Implemented within Galaxy Bioinformatics Platform to Analyze Host-Microbiome Interactions Underlying Human Disease

    Published on: January 10, 2025

    1.2K

    相关实验视频

    Last Updated: Jun 30, 2026

    Using the Open-Source MALDI TOF-MS IDBac Pipeline for Analysis of Microbial Protein and Specialized Metabolite Data
    09:29

    Using the Open-Source MALDI TOF-MS IDBac Pipeline for Analysis of Microbial Protein and Specialized Metabolite Data

    Published on: May 15, 2019

    20.3K
    An Integrated Workflow of Identification and Quantification on FDR Control-Based Untargeted Metabolome
    05:35

    An Integrated Workflow of Identification and Quantification on FDR Control-Based Untargeted Metabolome

    Published on: September 20, 2022

    4.2K
    A Clinical Metaproteomics Workflow Implemented within Galaxy Bioinformatics Platform to Analyze Host-Microbiome Interactions Underlying Human Disease
    09:52

    A Clinical Metaproteomics Workflow Implemented within Galaxy Bioinformatics Platform to Analyze Host-Microbiome Interactions Underlying Human Disease

    Published on: January 10, 2025

    1.2K
  • 使用增强的验证功能评估了所有可用的MW数据集,从而提高了数据质量.

    • 结论:

    • 更新的mwtab包 (v2.0.0) 显著提高了MW存储库中代谢学数据的质量和可用性.
    • 这些改进支持更好的数据策划,遵守FAIR原则,并促进大规模的元分析.
    • 免费可用的mwtab包和更新的网站使研究人员能够更有效地利用公共代谢学数据.