口腔癌研究中的口腔微生物群从采样到分析:策略,挑战和建议
Kelly Yi Ping Liu1,2,3, Andrew Huang1, Catherine Pepin2
1Department of Oral Biological and Medical Sciences, Faculty of Dentistry, University of British Columbia, 2199 Wesbrook Mall, Vancouver, BC V6T 1Z3, Canada.
Cancers
|January 10, 2026
概括
对口腔癌的口腔微生物组研究进行优化至关重要. 从采样到分析的标准化方法确保了可靠的数据,用于开发用于癌症检测和风险评估的临床生物标志物.
科学领域:
- 微生物学 微生物学
- 在瘤学瘤学.
- 基因组学就是基因组学.
背景情况:
- 人们越来越认识到口腔微生物组在口腔癌中的作用.
- 在瘤学中口腔微生物组研究的标准化方法上存在有限的共识.
研究的目的:
- 批判性地评估口腔癌口腔微生物组研究中采样,保存,DNA提取,测序和数据分析的当前策略.
- 为改善研究设计和使临床翻译成为可能提供一个框架.
主要方法:
- 对采样方法 (唾液,冲洗,抹布,刷子,活检),保存技术,DNA提取,16S rRNA和猎枪元基因组测序以及数据分析管道的叙述性审查.
- 在不同的采样方法中比较微生物产量,地点特异性和生物相关性.
主要成果:
- 采样方法影响微生物产量和位点特异性;病变导向方法提供更大的相关性.
- 保存和DNA提取影响微生物的稳定性和宿主DNA的去除.
- 16S rRNA 测序是常见的,而 shotgun metagenomics 提供了更高的分辨率,但面临临临床适用性挑战.
- 不一致的数据处理有助于变化的微生物特征.
结论:
- 在所有工作流程阶段的方法一致性对于口腔微生物组研究中的可复制,高质量的数据至关重要.
- 标准化方法对于将发现转化为临床适用的生物标志物,用于口腔癌检测和风险评估至关重要.
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