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相关概念视频

RNA Structure01:19

RNA Structure

7.1K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
7.1K
RNA Structure01:23

RNA Structure

78.7K
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
78.7K
Nucleic Acid Structure01:25

Nucleic Acid Structure

8.4K
The pentose sugar in DNA is deoxyribose, while in RNA the pentose sugar is ribose. The difference between the sugars is the presence of the hydroxyl group on the ribose's second carbon and a hydrogen on the deoxyribose's second carbon. The phosphate residue attaches to the hydroxyl group of the 5′ carbon of one sugar and the hydroxyl group of the 3′ carbon of the sugar of the next nucleotide, which forms  a 5′ to 3′ phosphodiester linkage.
DNA Structure
DNA...
8.4K
Nucleic Acids02:43

Nucleic Acids

49.5K
Nucleic acids are the most important macromolecules for the continuity of life. They carry the cell's genetic blueprint and carry instructions for its functioning.
DNA and RNA
The two main types of nucleic acids are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). DNA is the genetic material in all living organisms, ranging from single-celled bacteria to multicellular mammals. It is in the nucleus of eukaryotes and in the organelles, chloroplasts, and mitochondria. In prokaryotes,...
49.5K
RNA Stability01:53

RNA Stability

35.6K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
35.6K
Translational Regulation01:29

Translational Regulation

531
Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...
531

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相关实验视频

Updated: Jan 15, 2026

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
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Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

Published on: December 9, 2022

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使用可解释的机器学习来描述RNA四边形形态形态景观.

Sompriya Chatterjee1,2, Dhiman Ray1,2

  • 1Department of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403, United States.

The journal of physical chemistry letters
|January 14, 2026
PubMed
概括
此摘要是机器生成的。

可解释的人工智能与增强的采样相结合,有效地探索RNA四分体构造的构造景观. 这种方法揭示了关键状态和过渡,改善了核酸力场,计算量更少.

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Mapping RNA-RNA Interactions Globally Using Biotinylated Psoralen
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Mapping RNA-RNA Interactions Globally Using Biotinylated Psoralen

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Sample Preparation for Mass Spectrometry-based Identification of RNA-binding Regions
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Sample Preparation for Mass Spectrometry-based Identification of RNA-binding Regions

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相关实验视频

Last Updated: Jan 15, 2026

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
10:34

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells

Published on: December 9, 2022

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Mapping RNA-RNA Interactions Globally Using Biotinylated Psoralen
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Mapping RNA-RNA Interactions Globally Using Biotinylated Psoralen

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Sample Preparation for Mass Spectrometry-based Identification of RNA-binding Regions
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Sample Preparation for Mass Spectrometry-based Identification of RNA-binding Regions

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科学领域:

  • 计算生物学 计算生物学
  • 结构生物学 结构生物学
  • 生物物理学的生物物理.

背景情况:

  • RNA分子表现出对各种生理功能至关重要的形状灵活性.
  • RNA的结构复杂性,即使是短四度,也挑战了定量结构景观分析.
  • 传统的分子动力学方法在探索RNA构造空间方面需要大量的计算.

研究的目的:

  • 开发和验证一种计算方法,以有效地探索RNA四分体构造的构造景观.
  • 识别和描述单链RNA四分体中的关键构造状态和过渡.
  • 通过数据驱动的洞察来提高核酸力场的准确性.

主要方法:

  • 整合可解释的人工智能 (XAI) 与增强的采样算法.
  • 执行RNA四基体的分子动力学模拟.
  • 利用可解释的机器学习来识别构造变化的关键驱动力.

主要成果:

  • 成功捕获了关键RNA四分体的构造状态:堆叠,间隔,核基翻转和随机卷轴.
  • 与标准方法相比,实现了具有显著降低计算成本的不受偏见的人口抽样.
  • 传统分析往往忽略了明显的元稳定状态.
  • 确定了影响缓慢动态和非物理结构的关键扭转角度.

结论:

  • 可解释的人工智能和增强的采样提供了一个有效的策略来探索复杂的RNA构造格局.
  • 这种数据驱动的方法增强了RNA结构动态的表征.
  • 这些发现为完善核酸力场和理解RNA功能提供了基础.