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解码不一致的生物数据:在药物发现中实现增强人工智能预测能力的关键步骤

Mira A M Behnam1, Andrea Cavalli2, Diana Lousa3

  • 1Medicinal Chemistry, Institute of Pharmacy and Molecular Biotechnology, Heidelberg University, Im Neuenheimer Feld 364, Heidelberg 69120, Germany.

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概括

来自不同来源的生物活性数据的结合在机器学习 (ML) 模型中引入噪音. 解决测试协议变异对于准确的计算药物发现和蛋白质-连接体相互作用研究至关重要.

关键词:
人工智能的人工智能是人工智能.生物活性数据生物活性数据形状塑性 形状塑性 形状塑性机器学习是机器学习.蛋白质酶蛋白质酶是一种蛋白质.测试条件 测试条件

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科学领域:

  • 计算化学是一种计算化学.
  • 药物发现 药物发现
  • 生物化学 生物化学

背景情况:

  • 来自不同来源的生物活性数据的结合为机器学习 (ML) 模型引入了噪音.
  • 测试协议的变化 (缓冲组合,实验设置) 显著影响数据可靠性.
  • 酶和病毒表面蛋白质等蛋白质点表现出受外部因素影响的结构变化.

研究的目的:

  • 突出测试方案变化的对生物活性数据的影响.
  • 讨论在计算药物发现中减轻噪音的策略.
  • 探索深度学习 (DL) 和大型语言模型 (LLM) 在应对这些挑战方面的潜力.

主要方法:

  • 分析测试方案的变化及其对蛋白质标的影响.
  • 对处理酶抑制剂/结合剂数据的策略的审查.
  • 讨论深度学习 (DL) 模型的实用性.
  • 探索当前计算蛋白质-连接体相互作用研究的局限性.
  • 专家采访大语言模型 (LLM) 和代理人工智能.

主要成果:

  • 测试协议的差异是生物活性数据集中噪声的主要来源.
  • 酶和病毒蛋白的形态变化使数据集成复杂化.
  • 深度学习 (DL) 模型看起来有前途,但也有局限性.
  • LLM和代理AI为药物发现提供了潜在的进步.

结论:

  • 标准化测试协议对于可靠的ML模型培训在药物发现中至关重要.
  • 需要先进的计算方法,包括DL和LLM,以克服数据异质性.
  • 需要进一步的研究才能充分利用人工智能来预测蛋白质-连接体相互作用.