相关实验视频
Updated: Jan 18, 2026

11:32
Mapping RNA-RNA Interactions Globally Using Biotinylated Psoralen
Published on: May 24, 2017
12.6K
对RNA发针的结构探测量了RNA上的蛋白质占用量,并将其与人类细胞中的功能联系起来
bioRxiv : the preprint server for biology
|January 16, 2026
概括
研究人员开发了一种新的方法来测量细胞中的RNA结构和蛋白质结合. 这项技术揭示了RNA折叠是蛋白质识别的关键,并与功能结合.
科学领域:
- 分子生物学分子生物学
- 遗传学 是一个遗传学.
- 生物化学 生物化学
背景情况:
- RNA结构对于细胞过程如翻译和衰变至关重要.
- RNA结合蛋白 (RBPs) 控制着许多与RNA相关的功能.
- 现有的方法往往无法捕捉RNA-蛋白相互作用的结构上下文.
研究的目的:
- 在活细胞中同时测量RNA结构和RBP结合的定量框架.
- 确定RNA序列和结构对RBP识别的相对贡献.
- 将RBP结合占用与RNA降解等功能结果联系起来.
主要方法:
- 开发一个集成二甲基硫酸盐突变分析和测序 (DMS-MaPseq) 的定量框架.
- 应用到MS2毛突变的图书馆,以研究MS2外套蛋白 (MCP) 的结合.
- 整合一种可诱导的降解剂,以精确控制细胞内蛋白质水平.
主要成果:
- RNA折叠成为MCP识别的主要决定因素,需要稳定的MS2结构.
- MCP对其共识循环序列表现出强烈的偏好,对茎长度或GC含量的依赖最小.
- 推断的分数绑定值准确地预测了MCP在驱动RNA降解中的效率.
结论:
- 开发的DMS-MaPseq框架可以在体内测量RBP-RNA与单核酸和结构分辨率的亲和关系.
- 这种方法剖析了序列和结构在RBP结合特异性中的作用.
- 定量占用量测量可以预测功能RBP活动.
相关概念视频
Ribosome Profiling
4.1K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
4.1K
RNA Stability
35.6K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
35.6K
RNA Structure
7.1K
The basic structure of RNA consists of a string of ribonucleotides attached by phosphodiester bonds. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA) involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three...
7.1K
Types of RNA
9.1K
Three main types of RNA are involved in protein synthesis: messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). These RNAs perform diverse functions and can be broadly classified as protein-coding or non-coding RNA. Non-coding RNAs play important roles in regulating gene expression in response to developmental and environmental changes. Non-coding RNAs in prokaryotes can be manipulated to develop more effective antibacterial drugs for human or animal use.
RNA Performs Diverse...
RNA Performs Diverse...
9.1K
Chromatin Structure Regulates pre-mRNA Processing
8.1K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
8.1K
Experimental RNAi
7.3K
RNA interference (RNAi) is a cellular mechanism that inhibits gene expression by suppressing its transcription or activating the RNA degradation process. The mechanism was discovered by Andrew Fire and Craig Mello in 1998 in plants. Today, it is observed in almost all eukaryotes, including protozoa, flies, nematodes, insects, parasites, and mammals. This precise cellular mechanism of gene silencing has been developed into a technique that provides an efficient way to identify and determine the...
7.3K

