SorghumBase:一个用于基因组学,现象学和利益相关方参与的知识库
Nicholas Gladman1,2, Andrew Olson2, Sunita Kumari2
1Robert W. Holley Center for Agriculture and Health, US Department of Agriculture-Agricultural Research Service, Cornell University, Ithaca, NY 14853, United States.
Genetics
|January 19, 2026
概括
SorghumBase集中了农业数据,为研究提供了一个用户友好的资源. 发布9增强了基因组,变异和表型数据的访问,促进公平的数据原则.
科学领域:
- 农业科学 农业科学
- 生物信息学是一种生物信息学.
- 基因组学就是基因组学.
背景情况:
- 有效的农业科学依赖于集中,可访问的数据存储库.
- 遵守可查找,可访问,可互操作和可重复使用 (FAIR) 原则对于现代数据库至关重要.
研究的目的:
- 为了介绍SorghumBase Release 9,一个全面的知识库,为研究社区.
- 增强数据的可访问性和促进社区参与研究.
主要方法:
- 策划和聚合基因组,转录组,变异和表型数据.
- 开发一个使用开放访问软件的模块化框架,用于可持续的数据基础设施.
- 实施社区驱动的内容管理和参与倡议.
主要成果:
- SorghumBase Release 9包括88个参考基因组,超过1亿个映射变体和4100万个rsID.
- 具有更新的基因表达,同质和生殖质的可视化,以及来自GWAS和QTL Atlas的标准化表型数据.
- 增强的内容管理系统和宣传材料支持社区互动和培训.
结论:
- SorghumBase 作为数据和利益相关方参与的重要枢纽.
- 该知识库促进社区标准,以推进 Sorghum 研究和多种OMIC 育种.
- 发布9显著扩展数据资源和社区交互功能.
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