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相关概念视频

Shape and Texture of Coarse Aggregate01:25

Shape and Texture of Coarse Aggregate

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Aggregate shape is classified based on the relative sharpness or roundness of the edges and corners. This classification includes categories like rounded, angular, elongated, and flaky, each with specific characteristics. Rounded aggregates, fully shaped by attrition, are typical of river or seashore gravel, while angular aggregates, such as crushed rock, have well-defined edges. Aggregates that are elongated and flaky are less desirable, as they can reduce the workability and strength of...
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RNA Interference01:23

RNA Interference

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RNA interference (RNAi) is a process in which a small non-coding RNA molecule blocks the post-transcriptional expression of a gene by binding to its messenger RNA (mRNA) and preventing the protein from being translated.
This process occurs naturally in cells, often through the activity of genomically-encoded microRNAs. Researchers can take advantage of this mechanism by introducing synthetic RNAs to deactivate specific genes for research or therapeutic purposes. For example, RNAi could be used...
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RNA Structure01:23

RNA Structure

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Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
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RNA Stability01:53

RNA Stability

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Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
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RNA Splicing01:32

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Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
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RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...
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相关实验视频

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粗粒度模型和模拟多链RNA纳米恒星的模拟.

Pradnya R Kadam1, Justine Lim1, Mahdi Dizani1

  • 1†Department of Molecular, Cell, and Developmental Biology, ‡Department of Computational and Systems Biology, §Department of Mechanical and Aerospace Engineering, ∥Department of Bioengineering, ⊥Molecular Biology Institute, University of California, Los Angeles, Los Angeles, California 90095, United States.

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概括

合成RNA纳米星,灵感来自生物分子凝聚物,显示可调节的几何和灵活性. 臂数,盐和温度影响它们的结构,有助于设计基于RNA的新型材料.

关键词:
在RNA纳米恒星中.在RNA纳米技术上.粗粒度分子动力学的粗粒度分子动力学核酸纳米技术纳米技术阶段分离的相位分离.合成冷凝剂是一种合成的冷凝剂.

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科学领域:

  • 生物物理学的生物物理.
  • 合成生物学 合成生物学
  • 材料科学是一种材料科学.

背景情况:

  • 生物分子凝结物通过相分离来调节细胞过程.
  • 合成RNA纳米恒星提供了一个模块化平台,用于设计这些凝聚物.

研究的目的:

  • 量化三,四,五臂RNA纳米恒星的结构动态.
  • 研究价值,盐度和温度对纳米恒星几何和灵活性的影响.

主要方法:

  • 粗粒度建模的粗粒度建模
  • 使用oxRNA2平台进行分子动力学 (MD) 模拟.

主要成果:

  • 增加手臂数量减少了平均臂间角,但保持了灵活性.
  • 盐和温度对纳米恒星的几何和灵活性产生了不同的影响.
  • 与DNA纳米星相比,RNA纳米星表现出明显的几何偏好.

结论:

  • 价值,盐和温度是控制合成RNA纳米恒星属性的关键因素.
  • 这些发现为RNA纳米恒星的合理设计提供了信息,以便在工程凝聚物中预测到可预测的材料反应.