概括
非编码RNAs (ncRNAs) 通过影响结构上下文来调节蛋白相互作用. 瘤性相互作用显示的RNA缓冲比生理性更少,可能导致过度稳定.
科学领域:
- 分子生物学分子生物学
- 结构生物学 结构生物学
- 生物信息学是一种生物信息学.
背景情况:
- 非编码RNAs (ncRNAs) 在细胞过程中起着至关重要的作用.
- 蛋白与蛋白相互作用 (PPI) 是细胞功能的基础.
- 在PPI中ncRNAs的调控作用是一个新兴的研究领域.
研究的目的:
- 通过改变结构上下文来研究ncRNAs如何调节PPI.
- 为了比较生理与瘤性PPI中的RNA依赖调制.
- 分析改变RNA缓冲对蛋白质复合体稳定性的影响.
主要方法:
- 使用catRAPID进行RNA-蛋白相互作用预测.
- 使用AlphaFold3进行蛋白质复合体的结构建模.
- 综合计算方法分析RNA-蛋白相互作用和结构变化.
主要成果:
- 生理PPI显示出显著的共享ncRNA缓冲能力.
- 致癌相互作用呈现出减少或不存在的ncRNA重叠.
- AlphaFold3建模显示,突变的IDH1/2复合体中RNA缓冲的丧失导致了过度的接口稳定.
结论:
- ncRNAs作为PPI的结构调节器,而不是直接的抑制剂.
- 改变的ncRNA缓冲是致癌相互作用的特征.
- 丢失RNA缓冲可以驱动蛋白质复合体的病态稳定.
相关概念视频
lncRNA - Long Non-coding RNAs
9.9K
In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
9.9K
lncRNA - Long Non-coding RNAs
3.6K
3.6K
piRNA - Piwi-interacting RNAs
7.6K
PIWI-interacting RNAs, or piRNAs, are the most abundant short non-coding RNAs. More than 20,000 genes have been found in humans that code for piRNAs while only 2000 genes have been found for miRNAs. piRNAs can act at the transcriptional and post-transcriptional levels and have a vital role in silencing transposable elements present in germ cells. They are also involved in epigenetic silencing and activation. Previously, they were thought to function only in germ cells but new evidence suggests...
7.6K
siRNA - Small Interfering RNAs
18.6K
Small interfering RNAs, or siRNAs, are short regulatory RNA molecules that can silence genes post-transcriptionally, as well as the transcriptional level in some cases. siRNAs are important for protecting cells against viral infections and silencing transposable genetic elements.
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
In the cytoplasm, siRNA is processed from a double-stranded RNA, which comes from either endogenous DNA transcription or exogenous sources like a virus. This double-stranded RNA is then cleaved by the...
18.6K
RNA Structure
79.0K
Overview
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
The basic structure of RNA consists of a five-carbon sugar and one of four nitrogenous bases. Although most RNA is single-stranded, it can form complex secondary and tertiary structures. Such structures play essential roles in the regulation of transcription and translation.
Different Types of RNA Have the Same Basic Structure
There are three main types of ribonucleic acid (RNA): messenger RNA (mRNA), transfer RNA (tRNA), and ribosomal RNA (rRNA). All three RNA types consist of a...
79.0K
Protein and Protein Structure
87.4K
Proteins are one of the most abundant organic molecules in living systems and have the most diverse range of functions of all macromolecules. Proteins may be structural, regulatory, contractile, or protective. They may serve in transport, storage, or membranes; or they may be toxins or enzymes. Their structures, like their functions, vary greatly. They are all, however, amino acid polymers arranged in a linear sequence.
A protein's shape is critical to its function. For example, an enzyme...
A protein's shape is critical to its function. For example, an enzyme...
87.4K


