高分辨率激光微解剖,用于调查在形式氨固定的氨酸嵌入样本中的转录状态
Pierluigi Di Chiaro1, Lucia Nacci2, Giuseppe R Diaferia3
1Laboratory of Translational Research, Azienda Unità Sanitaria Locale-IRCCS di Reggio Emilia, Reggio Emilia, Italy.
Methods in molecular biology (Clifton, N.J.)
|February 2, 2026
概括
激光微解剖与RNA测序相结合,可以从组织样本中获得高分辨率的转录学见解. 这种具有成本效益的方法可以对特定细胞群体进行敏感的分子分析,特别是从FFPE标本.
科学领域:
- 分子生物学分子生物学
- 基因组学就是基因组学.
- 历史学 历史学 历史学
背景情况:
- 空间解析的转录学 (ST) 推动了组织异质性研究.
- 先进的ST提供全幻灯片分子映射.
- 激光微解剖 (LMD) 为有针对性的分析提供了高空间分辨率.
研究的目的:
- 突出LMD与RNA测序 (RNA-seq) 结合的价值,用于特定的研究问题.
- 展示LMD-RNA-seq作为一些高通量ST方法的优越替代品,用于敏感的转录基因分析.
- 强调LMD对常规组织学样本 (包括FFPE标本) 的实用性.
主要方法:
- 利用激光微切割 (LMD) 来精确地从复杂组织中隔离定义的细胞群或罕见的细胞群,基于形态注释.
- 在孤立样本上执行RNA测序 (RNA-seq),以获取转录基因数据.
- 将该协议应用于常规组织学样本,包括甲固定嵌 (FFPE) 样本.
主要成果:
- 与某些ST平台的计算解卷方法相比,LMD可以实现更深入,更敏感的转录基因分析.
- LMD-RNA-seq促进了使用已确定的组织学样本对大型患者队伍进行回顾性研究.
- 向的LMD-RNA-seq提供了一个具有成本效益和可扩展的解决方案,用于分析许多患者的许多特定区域.
结论:
- 一个强大的LMD-RNA-seq协议是分子生物学发现的宝贵工具.
- 这种方法可以从临床相关的生物样本中获得高度特定的分子洞察力.
- LMD-RNA-seq提供了一种实用且高效的方法,用于对特定组织区域进行详细的转录组分析.
更多相关视频
07:42A Novel Microdissection Approach to Recovering Mycobacterium tuberculosis Specific Transcripts from Formalin Fixed Paraffin Embedded Lung Granulomas
Published on: June 5, 2014
8.4K
06:43Standardized Processing for Formalin-Fixed, Paraffin-Embedded Cell Pellet Immunohistochemistry Controls
Published on: July 27, 2022
9.5K
相关概念视频
Transcription
156.4K
Overview
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...
156.4K
Transcription Factors
82.7K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
82.7K
Master Transcription Regulators
7.8K
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
7.8K
Eukaryotic Transcription Inhibitors
11.0K
Certain biochemical processes, such as embryonic development and cell growth regulation, depend on the repression of specific genes. DNA binding proteins known as eukaryotic transcription inhibitors regulate the repression of gene expression in eukaryotes. The presence of these inhibitors at the required location and time in the cell is triggered by the presence of hormones and additional signals from other cells.
Eukaryotic transcription inhibitors usually contain two distinct domains, a...
Eukaryotic transcription inhibitors usually contain two distinct domains, a...
11.0K
Eukaryotic Transcription Activators
12.8K
Transcription activators are proteins that promote the transcription of genes from DNA to RNA. In most cases, these proteins contain two separate domains ‒ a domain that binds to DNA and a domain for activating transcription; however, in some cases, a single domain is responsible for both binding and activation of transcription, as seen in the glucocorticoid receptor and MyoD.
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
12.8K
Fixed Action Patterns
17.7K
A fixed action pattern (FAP) is a specific, hard-wired sequence of behaviors that occurs in response to an external stimulus, called a sign stimulus. The behavior is “fixed” because it is essentially unchangeable—proceeding similarly across individuals of a species every time it occurs.
17.7K
