无处不在的功能协同部分解释了为什么大多数转录因子结合是非功能性的
bioRxiv : the preprint server for biology
|February 6, 2026
概括
大多数基因表达的变化并不能通过单个转录因子 (TF) 结合来预测. 我们的研究表明,其他结合的TF通常会改变TF的效果,这种现象被称为功能协同作用.
科学领域:
- 分子生物学分子生物学
- 系统生物学 系统生物学
- 遗传学 遗传学 是一个
背景情况:
- 转录因子 (TFs) 通过结合促进子区域来调节基因表达.
- 仅仅基于TF结合来预测基因表达变化是具有挑战性的,因为大多数结合的基因在TF扰动时不会改变表达.
研究的目的:
- 研究功能协同效应的现象,即在促进体中存在其他TF的存在会影响TF对基因表达的影响.
- 开发一种基因对TF扰动反应的预测模型.
主要方法:
- 使用新的直角方法创建了酵母中TF结合位置的综合数据集.
- 采用数学建模,从数据集中识别功能协同作用的实例.
主要成果:
- 功能协同作用是一个常见的现象,影响了对44种不同TF的反应.
- 48个TF作为修改者,其中一些TF修改了许多其他TF的影响.
- 该研究发现了功能协同作用的高可信度实例.
结论:
- 单独的TF结合位置数据不足以确定基因调节.
- 基因调节网络模型需要改进,以纳入TFs对彼此的修改效应.
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