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相关概念视频

Mass Spectrometry: Complex Analysis01:21

Mass Spectrometry: Complex Analysis

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Mass spectrometry is an important technique for the identification of pure compounds. However, it has some limitations for the analysis of complex mixtures, often due to excessive fragmentation making the spectrum too complicated to decipher. Mass spectrometry can be combined with suitable separation methods in sequence, forming hyphenated methods, which are useful in the analysis of complex mixtures.
GC–MS is a powerful hyphenated method commonly used in forensics and environmental...
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Mass Spectrometry: Overview01:19

Mass Spectrometry: Overview

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Mass spectrometry is an analytical technique used to determine the molecular mass and molecular formula of a compound. The basic principle of mass spectrometry is to generate ions from the analyte molecule and measure these ion abundances against their molecular mass. One common type of ionization, known as electron ionization or EI, bombards the analyte molecules in the gas phase with high-energy electron beams. The electron beams displace an electron from the molecule and leave behind a...
9.0K
Tandem Mass Spectrometry01:21

Tandem Mass Spectrometry

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Tandem mass spectrometry is a technique that uses multiple mass analyzers in series to obtain a higher selectivity and reduce chemical noise during analyte detection. Instruments with multiple analyzers separated by an interaction cell enable secondary fragmentation and selected study of the fragment ions.Secondary fragmentations occur in the interaction cell and can be induced by various factors. Fragmentation induced by collision with inert gases, such as N2, Ar, He, etc., is called...
2.5K
Mass Spectrometry: Isotope Effect01:13

Mass Spectrometry: Isotope Effect

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Most elements exist in nature as a mixture of isotopes. The isotopes differ in weight due to their respective number of neutrons. The molecular weight of a molecule is different depending on the specific isotope of its elements involved. As a result, the mass spectrum of the molecule exhibits peaks from the same fragment at multiple positions. The positions of these mass signals depend on the mass differences between isotopes. Furthermore, the intensity of these signals is dependent on the...
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Mass Spectrometry of Amines01:15

Mass Spectrometry of Amines

5.4K
In mass spectroscopy, amines undergo fragmentation to give parent ions with odd molecule weights. This observed mass spectrum follows the nitrogen rule; a molecule with an odd number of nitrogen atoms produces a molecular ion with an odd molecular weight. Amines undergo fragmentation through α cleavage, producing nitrogen-containing cations—iminium ions—and alkyl radicals. Mass spectra of aromatic and cyclic aliphatic amines exhibit strong molecular ion peaks, but acyclic...
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Chemical Ionization (CI) Mass Spectrometry01:21

Chemical Ionization (CI) Mass Spectrometry

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The molecular ion peak of a molecule in the mass spectrum provides vital information for molecular identification. However, conventional electron impact ionization can lead to the rapid dissociation of some molecular ions before they reach the detector. A milder ionization method is required to increase the lifetime of such ionized analyte molecules. Chemical ionization (CI) is a gas-phase protonation reaction useful for mass-analyzing analyte molecules that are easily protonated to yield the...
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  1. 首页
  2. 使用nextflow进行定量dia质谱的完整数据分析工作流程.
  1. 首页
  2. 使用nextflow进行定量dia质谱的完整数据分析工作流程.

相关实验视频

Complete Workflow for Analysis of Histone Post-translational Modifications Using Bottom-up Mass Spectrometry: From Histone Extraction to Data Analysis
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Complete Workflow for Analysis of Histone Post-translational Modifications Using Bottom-up Mass Spectrometry: From Histone Extraction to Data Analysis

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使用Nextflow进行定量DIA质谱的完整数据分析工作流程.

Mats Perk1, Sami Pietilä1, Tommi Välikangas1

  • 1Turku Bioscience Centre, University of Turku and Åbo Akademi University, FI-20520 Turku, Finland.

Journal of proteome research
|February 6, 2026

在PubMed 上查看摘要

概括
此摘要是机器生成的。

我们开发了 glaDIAtor-nf,这是一个Nextflow工作流程,用于分析复杂的数据独立获取 (DIA) 质谱蛋白质组学数据. 该工具有效地重新分析公共数据集,揭示隐藏的蛋白质组模式,例如乳腺癌研究.

关键词:
数据分析数据分析数据分析数据独立的获取采集.质谱测量质谱测量质谱测量质谱测量质量测量质谱测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量质量测量下一个流是下一个流.定量化的蛋白质组学.

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Lipid Droplet Isolation for Quantitative Mass Spectrometry Analysis
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科学领域:

  • 蛋白质组学是指蛋白质组学
  • 质谱测量质量谱测量
  • 生物信息学是一种生物信息学.

背景情况:

  • 数据独立采集 (DIA) 质谱提供了全面的蛋白质分析,但产生了庞大而复杂的数据集.
  • 分析DIA数据需要强大的计算工具来管理复杂的管道和高性能计算.

研究的目的:

  • 引入 glaDIAtor-nf,一个基于Nextflow的工作流程,用于非目标的DIA质谱蛋白质组学数据分析.
  • 证明 glaDIAtor-nf 在重新分析公共数据集和揭示以前隐藏的生物见解方面的实用性.

主要方法:

  • 使用 Nextflow 工作流管理系统开发 glaDIAtor-nf.
  • 使用黄金标准数据集进行严格的技术验证.
  • 对公众乳腺癌蛋白质组学数据的应用.

主要成果:

  • glaDIAtor-nf在分析DIA质谱数据方面表现出技术准确性.
  • 使用glaDIAtor-nf对公众乳腺癌数据的重新分析揭示了以前未被检测到的蛋白质组模式.
  • 该研究强调了利用高效工具重新分析现有公共数据的潜力.

结论:

  • glaDIAtor-nf为大规模的DIA蛋白质组学数据分析提供了一种高效和自动化的解决方案.
  • 工作流程有助于从公共存储库中发现新的生物学见解.
  • 对于用户友好的工具有很大的需求,以便广泛地重新分析公共蛋白质组学数据.