日本北海道Sika鹿的基因组组合数据,Cervus nippon yesoensis的基因组组合数据
Yuki Matsumoto1,2, Junco Nagata3, Yukiko Matsuura4
1Research and Development Section, Anicom Specialty Medical Institute Inc., 2-6-3 5F Chojamachi, Yokohamashi-Nakaku, Kanagawa 231-0033, Japan.
Data in brief
|February 9, 2026
概括
研究人员组建了一个新的,高质量的基因组,用于Sika鹿 (Cervus nippon) 亚种C. n. yesoensis. 这个CerNipYes1.0组件为研究鹿的进化和分子生物学提供了宝贵的资源.
科学领域:
- 基因组学就是基因组学.
- 动物学 动物学
- 分子生物学分子生物学
背景情况:
- 西卡鹿 (Cervus nippon) 在东亚原产的14个亚种中表现出显著的表型和遗传多样性.
- 了解这种多样性需要各种亚种的高质量基因组资源.
研究的目的:
- 为西卡鹿构建一个新的基因组组件,重点关注大型亚种C. n. yesoensis.
- 为未来对鹿生物学和进化研究提供全面的基因组资源.
主要方法:
- 利用太平洋生物科学HiFi长读测序技术进行精确的基因组组装.
- 雇佣完整性和基准测试通用单拷贝正义医生 (BUSCO) 进行严格的基因组完整性评估.
主要成果:
- 产生了一个新的基因组组件,CerNipYes1.0,大小为3.1Gb,比以前报告的组件大.
- 实现了1810个支架数量,N50长度为77Mb,这表明了一个高度连续的组件.
- 确认了异常的基因组完整性,发现了99.75%的预期基因.
结论:
- 在CerNipYes1.0基因组组装代表着Sika鹿基因组学的一个重大进步.
- 这种资源对于深入研究分子生物学,系系学和Cervidae家族内的进化至关重要.
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