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Next-generation Sequencing03:00

Next-generation Sequencing

98.7K
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
98.7K
Peptide Bonds02:43

Peptide Bonds

83.4K
A peptide bond covalently attaches amino acids through a dehydration reaction. One amino acid's carboxyl group and another amino acid's amino group combine, releasing a water molecule. The resulting bond is the peptide bond. The products that such linkages form are peptides. As more amino acids join this growing chain, the resulting chain is a polypeptide. Each polypeptide has a free amino group at one end. This end has the N-terminal, or the amino-terminal, and the other end has a free...
83.4K
Cis-regulatory Sequences02:02

Cis-regulatory Sequences

11.9K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
11.9K
Stereoisomerism of Cyclic Compounds02:33

Stereoisomerism of Cyclic Compounds

11.2K
In this lesson, we delve into the role of ring conformation and its stability, which determines the spatial arrangement and, consequently, the molecular symmetry and stereoisomerism of cyclic compounds. 1,2-Dimethylcyclohexane is used as a case study to evaluate the possible number of stereoisomers. Here, given the multiple (n = 2) chiral centers, there are 2n = 4 possible configurations that lack a plane of symmetry, as the ring skeleton exists in a non-planar chair conformation. In addition,...
11.2K
Voltammetric Techniques: Cyclic Voltammetry01:10

Voltammetric Techniques: Cyclic Voltammetry

1.6K
Cyclic voltammetry (CV) is an electrochemical technique used to investigate the redox properties of a chemical species. It involves measuring the current response of an electrochemical cell as a function of the applied potential. The setup for cyclic voltammetry typically consists of a working electrode, a reference electrode, and a counter electrode—all immersed in an electrolyte solution. The working electrode is where the redox reaction of interest occurs, while the reference electrode...
1.6K
Cyclic Processes And Isolated Systems01:19

Cyclic Processes And Isolated Systems

3.5K
A thermodynamic system with zero heat exchange and work is an isolated system. For these systems, the internal energy remains constant.
In the case of a non-isolated system, the change in the internal energy is zero only if the process is cyclic. A thermodynamic process is considered cyclic if the system undergoes a series of changes and returns to its initial state. 
Consider a cyclic process that returns to its initial state, undergoing a four-step process. The heat transfer along each...
3.5K

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  2. 循环mpnn:稳定的循环序列生成
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  2. 循环mpnn:稳定的循环序列生成

相关实验视频

Constructing Cyclic Peptides Using an On-Tether Sulfonium Center
07:11

Constructing Cyclic Peptides Using an On-Tether Sulfonium Center

Published on: September 28, 2022

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循环MPNN:稳定的循环序列生成

Andrew C Powers, Yanapat Janthana, Parisa Hosseinzadeh

    bioRxiv : the preprint server for biology
    |February 9, 2026

    在PubMed 上查看摘要

    概括
    此摘要是机器生成的。

    我们开发了CyclicMPNN,这是一个新的AI模型,可以设计稳定的循环序列用于治疗. 这种方法提高了开发新循环类药物的成功率.

    更多相关视频

    Construction of Cyclic Cell-Penetrating Peptides for Enhanced Penetration of Biological Barriers
    10:12

    Construction of Cyclic Cell-Penetrating Peptides for Enhanced Penetration of Biological Barriers

    Published on: September 19, 2022

    2.8K
    Author Spotlight: Improving the Production of Self-Assembling Fibers and Peptide Hydrogels for Superior Biocompatibility
    05:24

    Author Spotlight: Improving the Production of Self-Assembling Fibers and Peptide Hydrogels for Superior Biocompatibility

    Published on: September 6, 2024

    1.7K

    相关实验视频

    Constructing Cyclic Peptides Using an On-Tether Sulfonium Center
    07:11

    Constructing Cyclic Peptides Using an On-Tether Sulfonium Center

    Published on: September 28, 2022

    3.2K
    Construction of Cyclic Cell-Penetrating Peptides for Enhanced Penetration of Biological Barriers
    10:12

    Construction of Cyclic Cell-Penetrating Peptides for Enhanced Penetration of Biological Barriers

    Published on: September 19, 2022

    2.8K
    Author Spotlight: Improving the Production of Self-Assembling Fibers and Peptide Hydrogels for Superior Biocompatibility
    05:24

    Author Spotlight: Improving the Production of Self-Assembling Fibers and Peptide Hydrogels for Superior Biocompatibility

    Published on: September 6, 2024

    1.7K

    科学领域:

    • 生物化学 生物化学
    • 计算生物学 计算生物学
    • 药物发现 药物发现 药物发现

    背景情况:

    • 循环提供治疗优势,如稳定性和细胞透性.
    • 像CyclicCAE和RFPeptide这样的先进模型加速了循环骨干的生成.
    • 设计稳定的循环序列用于特定的脊柱仍然具有挑战性.

    研究的目的:

    • 开发一种人工智能驱动的方法来设计能量有利的循环序列.
    • 为了提高治疗循环开发的成功率.

    主要方法:

    • 微调 ProteinMPNN 深度学习模型.
    • 使用来自蛋白质数据库的X射线晶体结构.
    • 在培训中将基生成的循环片纳入培训.

    主要成果:

    • 循环MPNN在循环序列设计中表现优于蛋白MPNN.
    • 生成的序列表现出增强的能量稳定性和折叠成功率.
    • 该模型有效地用于图案绘制和 de novo 序列设计.

    结论:

    • 循环MPNN促进了稳定的循环序列的快速设计.
  • 预计这一进步将增加治疗循环开发的成功率.