相关实验视频
Updated: Feb 13, 2026

10:16
Mining Spatial Transcriptomics Datasets using DeepSpaceDB
Published on: September 5, 2025
805
1-COSTA:棉花1-DPA卵泡空间转录组图谱的数据库
Shengjun Zhao1, Yiling Pan1, Luyao Wang2,3
1Zhejiang Provincial Key Laboratory of Crop Genetic Resources, the Advanced Seed Institute, Plant Precision Breeding Academy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China.
Journal of experimental botany
|February 11, 2026
概括
这项研究绘制了棉花卵子中的基因表达,揭示了特定组织区域如何调节纤维发育和产量. 这些发现为改善棉花纤维和种子生产提供了宝贵的资源.
科学领域:
- 植物生物学 植物生物学
- 基因组学就是基因组学.
- 农业科学 农业科学
背景情况:
- 棉花纤维对于织品至关重要,其来源于卵子表皮.
- 了解卵巢表皮基因表达对于指导棉纤维发展至关重要.
研究的目的:
- 为了创建一个高分辨率的棉花卵子的空间转录组图谱.
- 确定参与早期棉纤维发育和产量调节的关键基因和途径.
主要方法:
- 应用的10×基因组学Visium空间转录组学在一天后的棉花卵子.
- 利用Seurat进行数据规范化,缩小维度和聚类来细分卵子组织.
- 根据解剖特征将卵子细分成七个不同的组织群.
主要成果:
- 在七个不同的棉花卵子组织组中确定了独特的转录特征.
- 局部化初级细胞生物合成到外围整体膜的沙拉索末端 (纤维凝结).
- 在外围整体膜的微支柱末端发现了脂质运输丰富,与纤维产量有关.
结论:
- 1-DPA Cotton Ovule Spatial Transcriptome Atlas (1-COSTA) 提供了一个全面的空间基因表达地图.
- 1-COSTA有助于理解棉花纤维和种子产量的空间基因调节.
- 1-COSTA数据库提供了一个用户友好的平台,用于探索棉花卵子发育和基因表达模式.
相关概念视频
SN1 Reaction: Stereochemistry
10.4K
This lesson provides an in-depth discussion of the stereochemical outcomes in an SN1 reaction.
In the first step of an SN1 reaction, the bond between the electrophilic carbon and the leaving group ionizes to generate the carbocation intermediate. The second step of the mechanism is the nucleophilic attack.
In the formed carbocation, the positively charged carbon is sp2 hybridized with a trigonal planar geometry. As all the three substituents lie on the same plane, a plane of symmetry for the...
In the first step of an SN1 reaction, the bond between the electrophilic carbon and the leaving group ionizes to generate the carbocation intermediate. The second step of the mechanism is the nucleophilic attack.
In the formed carbocation, the positively charged carbon is sp2 hybridized with a trigonal planar geometry. As all the three substituents lie on the same plane, a plane of symmetry for the...
10.4K
SN1 Reaction: Kinetics
9.7K
In an SN2 reaction, the reaction rate depends on both the type of nucleophile and the substrate. A hindered tertiary alkyl halide is practically inert to the SN2 mechanism despite using a strong nucleophile.
However, Sir Christopher Ingold and Edward D. Hughes, who studied the kinetics of various nucleophilic substitution reactions, noticed that a tertiary alkyl halide does undergo a nucleophilic substitution reaction in the presence of a weak nucleophile. While studying the substitution...
However, Sir Christopher Ingold and Edward D. Hughes, who studied the kinetics of various nucleophilic substitution reactions, noticed that a tertiary alkyl halide does undergo a nucleophilic substitution reaction in the presence of a weak nucleophile. While studying the substitution...
9.7K
SN1 Reaction: Mechanism
14.4K
Kinetic studies of ionization of a tertiary halide in a protic solvent suggest that only the substrate participates in the rate-determining step (slow step). The nucleophile is involved only after the slowest step. The SN1 reaction takes place in a multiple-step mechanism.
Firstly, the haloalkane ionizes to generate a carbocation intermediate and a halide ion. This heterolytic cleavage is highly endothermic with large activation energy. The ionization of the substrate, facilitated by a...
Firstly, the haloalkane ionizes to generate a carbocation intermediate and a halide ion. This heterolytic cleavage is highly endothermic with large activation energy. The ionization of the substrate, facilitated by a...
14.4K
Acidity of 1-Alkynes
11.3K
The acidic strength of hydrocarbons follows the order: Alkynes > Alkenes > Alkanes. The strength of an acid is commonly expressed in units of pKa — the lower the pKa, the stronger the acid. Among the hydrocarbons, terminal alkynes have lower pKa values and are, therefore, more acidic. For example, the pKa values for ethane, ethene, and acetylene are 51, 44, and 25, respectively, as shown here.
11.3K
Predicting Products: SN1 vs. SN2
17.4K
Nucleophilic substitution reactions of alkyl halides can proceed via an SN1 or an SN2 mechanism. While in SN2 reactions, the nucleophile attacks the substrate simultaneously as the leaving group departs, in SN1 reactions, the substrate first dissociates to give the carbocation intermediate. Various factors such as the structure of the substrate, the strength of the nucleophile, and the nature of the solvent promote one mechanism over the other.
With increased substitution on the alkyl halide,...
With increased substitution on the alkyl halide,...
17.4K
Preparation of 1° Amines: Gabriel Synthesis
4.7K
Direct alkylation is not a suitable method for synthesizing amines because it produces polyalkylated products. Gabriel synthesis is the most preferred method to exclusively make primary amines. The method uses phthalimide, which contains a protected form of nitrogen that participates in alkylation only once to predominantly give primary amines.
Strong bases like NaOH or KOH deprotonate the phthalimide to form the corresponding anion, which acts as a nucleophile. Further, the anion attacks an...
Strong bases like NaOH or KOH deprotonate the phthalimide to form the corresponding anion, which acts as a nucleophile. Further, the anion attacks an...
4.7K

