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Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
Conservative Site-specific Recombination and Phase Variation02:53

Conservative Site-specific Recombination and Phase Variation

Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
Epistasis Analysis01:09

Epistasis Analysis

Although Mendel chose seven unrelated traits in peas to study gene segregation, most traits involve multiple gene interactions that create a spectrum of phenotypes. When the interaction of various genes or alleles at different locations influences a phenotype, this is called epistasis. Epistasis often involves one gene masking or interfering with the expression of another (antagonistic epistasis). Epistasis often occurs when different genes are part of the same biochemical pathway. The...
Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
Evolutionary Processes in Microbes01:26

Evolutionary Processes in Microbes

Microbial evolution occurs rapidly due to short generation times and a variety of genetic processes, including horizontal gene transfer, mutation, recombination, and genetic drift. These mechanisms collectively enable microbes to adapt swiftly to changing environments.Horizontal gene transfer (HGT) allows genes to move between different species and occurs through three main mechanisms: conjugation, transformation, and transduction. Conjugation involves direct cell-to-cell contact for DNA...
Evolution of New Traits in Microbes01:24

Evolution of New Traits in Microbes

Microorganisms evolve rapidly due to their large population sizes and short generation times, often exhibiting measurable changes within days under laboratory conditions. Natural selection acts on standing genetic variation, enabling the retention and amplification of beneficial traits that confer fitness advantages in changing environments.Adaptive Pigment Regulation in RhodobacterIn Rhodobacter, a genus of purple non-sulfur bacteria, light-harvesting pigments such as bacteriochlorophyll and...

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相关实验视频

Updated: Jun 20, 2026

Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli
09:01

Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli

Published on: March 16, 2011

由蛋白质语言模型和表观相互作用指导的快速定向进化.

Vincent Q Tran1,2, Matthew Nemeth1, Liam J Bartie1

  • 1Arc Institute, 3181 Porter Drive, Palo Alto, CA, USA.

Science (New York, N.Y.)
|February 19, 2026
PubMed
概括

我们开发了MULTI-evolve,这是一个快速的蛋白质工程框架,以有效地发现协同突变. 这种以机器学习为指导的方法加速了发现改善的蛋白质功能.

更多相关视频

Directed Evolution Method in Saccharomyces cerevisiae: Mutant Library Creation and Screening
10:50

Directed Evolution Method in Saccharomyces cerevisiae: Mutant Library Creation and Screening

Published on: April 1, 2016

A Practical Guide to Phage- and Robotics-Assisted Near-Continuous Evolution
05:08

A Practical Guide to Phage- and Robotics-Assisted Near-Continuous Evolution

Published on: January 12, 2024

相关实验视频

Last Updated: Jun 20, 2026

Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli
09:01

Mutagenesis and Functional Selection Protocols for Directed Evolution of Proteins in E. coli

Published on: March 16, 2011

Directed Evolution Method in Saccharomyces cerevisiae: Mutant Library Creation and Screening
10:50

Directed Evolution Method in Saccharomyces cerevisiae: Mutant Library Creation and Screening

Published on: April 1, 2016

A Practical Guide to Phage- and Robotics-Assisted Near-Continuous Evolution
05:08

A Practical Guide to Phage- and Robotics-Assisted Near-Continuous Evolution

Published on: January 12, 2024

科学领域:

  • 生物化学和分子生物学
  • 计算生物学 计算生物学
  • 蛋白质工程是指蛋白质工程.

背景情况:

  • 蛋白质工程在为协同突变导航广的序列空间方面面临着挑战.
  • 目前的方法,如阶段性突变堆叠和机器学习,往往是低效的或资源密集的.

研究的目的:

  • 引入MULTI-evolve,这是一个用于蛋白质多突变的系统工程的新框架.
  • 克服基因合成的局限性,加速发现有益突变.

主要方法:

  • 使用蛋白质语言模型或功能数据与表观模型相结合,以预测协同突变组合.
  • 使用MULTI-assembly,一种高效的突变发生技术,用于组装多基基基序列.

主要成果:

  • 在单一轮的定向进化中,在三种不同的蛋白质中实现了高达10倍的蛋白质改进.
  • 证明了框架能够简化端到端的多变异工程的能力.

结论:

  • MULTI-evolve为设计具有增强功能的蛋白质提供了快速有效的解决方案.
  • 该框架适用于广泛的蛋白质类型和功能.