一种修改后的间接方法,用于计算近亲繁殖系数
Che Hsuan Huang1, Seijiro Hirama2, Toshimi Baba3
1Division of Dairy Production Research, Hokkaido Agricultural Research Center, NARO, Sapporo, 062-8555, Japan.
Genetics, selection, evolution : GSE
|February 22, 2026
概括
一种新的间接方法显著加快了对大型牲畜种群的内生系数的计算. 这种增强的算法提高了效率,对于人工授精育种计划来说是实用的.
科学领域:
- 动物遗传学动物遗传学
- 量化遗传学 量化遗传学
- 计算生物学 计算生物学
背景情况:
- 计算内生系数的现有方法在内存使用,血统深度和家庭规模方面存在局限性.
- 这些局限性阻碍了大型畜牧种群的高效计算.
研究的目的:
- 提出一种修改后的间接方法,用于有效计算同胞繁殖系数.
- 为了应对大型血统和深层次的祖先信息所带来的计算挑战.
主要方法:
- 开发一种经过修改的间接算法,以识别,计算和存储用于计算近亲繁殖系数所需的元素.
- 在一个大数据集上测试算法,其中包括860万个具有广泛血统信息的日本Holstein.
主要成果:
- 与以前的间接方法相比,修改后的间接方法大大减少了计算时间,从103.4秒减少到7.2秒.
- 与32个线程并行将计算时间进一步缩短至1.1秒.
- 该方法证明了对血统深度和家族规模的变化具有稳定性.
结论:
- 拟议的修改间接方法为计算内生系数提供了显著的计算改进.
- 它的效率和可扩展性使其非常适用于管理大型牲畜群体,特别是那些使用人工授精的牲畜群体.
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