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相关概念视频

Ribosome Profiling02:24

Ribosome Profiling

4.2K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
4.2K
Homologous Recombination02:31

Homologous Recombination

64.2K
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
64.2K
CRISPR and crRNAs02:53

CRISPR and crRNAs

19.3K
Bacteria and archaea are susceptible to viral infections just like eukaryotes; therefore, they have developed a unique adaptive immune system to protect themselves. Clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins (CRISPR-Cas) are present in more than 45% of known bacteria and 90% of known archaea.
The CRISPR-Cas system stores a copy of foreign DNA in the host genome and uses it to identify the foreign DNA upon reinfection. CRISPR-Cas has three different...
19.3K
Directing Proteins to the Rough Endoplasmic Reticulum01:34

Directing Proteins to the Rough Endoplasmic Reticulum

18.0K
The organelle-specific signaling sequences direct proteins synthesized in the cytosol to their final destination like ER, mitochondria, peroxisomes, etc. Some of the proteins directed to ER are then trafficked via vesicles to other organelles within the cell or the extracellular environment through the Golgi complex. For example, the rough ER synthesizes soluble proteins for transportation to the lysosomes or secretion out of the cell. It can also synthesize transmembrane proteins that can...
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相关实验视频

Updated: Feb 24, 2026

iCLIP - Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution
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HCR-Proxy 在分区分辨率下解决特定站点的近接RNA微环境.

Anja Trupej1,2,3,4, Valter Bergant1,5, Jona Novljan1,2,3,6

  • 1National Institute of Chemistry, Ljubljana, SIovenia.

Nucleic acids research
|February 23, 2026
PubMed
概括

一种新的技术,HCR-Proxy,以高分辨率绘制RNA凝结体内的蛋白质结构. 这揭示了RNA序列是如何在细胞区间 (如细胞核) 中决定蛋白质组织的.

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Chromatin Isolation by RNA Purification ChIRP
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Chromatin Isolation by RNA Purification ChIRP

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相关实验视频

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iCLIP - Transcriptome-wide Mapping of Protein-RNA Interactions with Individual Nucleotide Resolution

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Monitoring Protein-RNA Interaction Dynamics In Vivo at High Temporal Resolution Using χCRAC
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科学领域:

  • 细胞生物学 细胞生物学
  • 分子生物学分子生物学
  • 生物化学 生物化学

背景情况:

  • RNA 架构凝聚物对于细胞功能和疾病至关重要.
  • 在这些凝聚物中以分区分辨率映射蛋白质结构是具有挑战性的.

研究的目的:

  • 开发一种用于高分辨率绘制RNA-近位蛋白质组的新技术.
  • 研究核子子区内的空间组织和蛋白质分区.

主要方法:

  • 介绍了HCR-Proxy,一种接近性标记技术,将杂交连锁反应 (HCR) 信号放大与现场接近性生物化 (Proxy) 结合起来.
  • 应用HCR-Proxy到核中的新生rRNA前点.
  • 综合结果与深度学习框架.

主要成果:

  • 在分区分辨率下,HCR-Proxy启用了RNA邻近蛋白质的蛋白质定型.
  • 揭示了核子子部的独特蛋白质原子签名.
  • 发现了基于电荷,分子量和RNA结合域的蛋白质分区的RNA序列驱动空间逻辑.

结论:

  • HCR-Proxy提供了核细胞内的RNA相互作用体的空间分辨率图.
  • 证明了蛋白质组织的序列编码基础,在嵌套的凝结物子组件中.
  • 建立了HCR-Proxy作为RNA互动原子发现的可扩展平台,将转录本地化与蛋白质组语境联系起来.