基于机器学习的多组学在益生菌开发中的应用趋势
Yu Chen1, Zhuqing Xing1, Jiachuan Sheng2
1School of Public Health, Tianjin University of Traditional Chinese Medicine, Tianjin 301617, China.
Journal of agricultural and food chemistry
|March 5, 2026
概括
机器学习 (ML) 通过分析多组数据来进行选择和预测来推动益生菌研究. 挑战包括数据集成和验证,需要结合计算和实验方法进行优化.
科学领域:
- 微生物学 微生物学
- 生物信息学是一种生物信息学.
- 计算生物学 计算生物学
背景情况:
- 机器学习 (ML) 在益生菌研究中变得越来越重要,这是由于计算方法和多组技术的进步.
- 益生菌的开发传统上依赖于经验方法,往往缺乏系统的,定量方法.
研究的目的:
- 审查最近的机器学习应用在各种omics学科的益生菌研究.
- 根据功能目标组织研究,如选择,预测和优化.
- 突出ML在整合异构的OMIC数据中的作用,以增强益生菌的发展.
主要方法:
- 在基因组学,转录组学,代谢组学,微生物组分析和文化组学中对ML辅助应用的系统审查.
- 研究的分类基于四个功能目标:益生菌选择,功能预测,代谢活动预测和有效性优化.
- 讨论分析工具,工作流程和数据整合策略.
主要成果:
- 机器学习促进了多样化的欧米克数据的整合,以实现更系统,更定量地开发益生菌.
- 确定了ML辅助益生菌研究的代表性分析工具和工作流程.
- 讨论了关键的局限性,如数据异质性,不平衡的标签和捕捉复杂的相互作用.
结论:
- 机器学习为促进益生菌研究和开发提供了强大的工具.
- 克服数据集成和模型稳定性的局限性对于未来的进步至关重要.
- 代计算-实验框架对于合理的益生菌优化和确保生物相关性至关重要.
更多相关视频
08:51Author Spotlight: Integrated Multi-Omics Analysis for Unveiling Multicellular Immune Signatures in Clinical Heart Attack Cohorts
Published on: September 20, 2024
2.2K
09:31Evaluation of Microbial Safety of Dairies using Bacterial Proteomic Profiling via MALDI Approach
Published on: October 7, 2025
663
相关概念视频
Modern Molecular Taxonomy
786
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
786
Applications of Molecular Taxonomy
638
Molecular taxonomy has revolutionized the understanding and classification of bacteria, providing precise insights into their diversity, evolutionary relationships, and ecological roles. By utilizing molecular techniques such as DNA sequencing and fingerprinting, researchers have made significant strides in various fields related to bacterial studies.Resolving Taxonomic AmbiguitiesMolecular taxonomy has been instrumental in distinguishing closely related bacterial species initially thought to...
638
Proteomics
10.0K
A proteome is the entire set of proteins that a cell type produces. We can study proteomes using the knowledge of genomes because genes code for mRNAs, and the mRNAs encode proteins. Although mRNA analysis is a step in the right direction, not all mRNAs are translated into proteins.
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
10.0K
Genomics
41.2K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
41.2K
