5-Aza-Cytidine 增强了终端多化位点的使用,用于细胞中全长的转录
Samuel Ogunsola1, Ling Liu1, Urmi Das1
1Department of Physiology & Pathophysiology, Max Rady College of Medicine, Rady Faculty of Health Sciences, University of Manitoba, Winnipeg, Manitoba, Canada.
Genes to cells : devoted to molecular & cellular mechanisms
|March 10, 2026
概括
抗癌药物5-aza-cytidine (5-azaC) 通过将多基化转移到基因组终端外因子 (GTEs) 来促进全长mRNA的产生. 这揭示了5-azaC的新机制.
科学领域:
- 分子生物学分子生物学
- 癌症研究 癌症研究
- 基因组学就是基因组学.
背景情况:
- 5-aza-cytidine (5-azaC) 是一种抑制DNA甲基转移酶 (DNMTs) 的抗癌药物.
- 5-azaC对基因表达的确切影响,特别是mRNA处理,尚未完全理解.
研究的目的:
- 为了研究5-azaC对mRNA多化和转录长度的影响.
- 阐明5-azaC影响癌细胞基因表达的机制.
主要方法:
- 用5-azaC治疗培养的GH3垂体瘤细胞和MOLM-13白血病细胞.
- 通过转录组分析分析mRNA多基化位点使用情况和替代多基化因子.
- 检查mRNA处理因子的表达水平,如Scaf4,Scaf8,E2f2和PCF11.
主要成果:
- 5-azaC治疗增加了跨转录组的基因组终端外体 (GTEs) 的相对使用率.
- 这种从近位点转移到GTEs的多基化转移导致了全长转录的产生.
- 5-azaC上调抗终结因子 (Scaf4,Scaf8) 和下调早期终结增强剂 (E2f2).
- PCF11,一个近接的多元A位点因子,被上调,这表明细胞对抗转录延长的反应.
结论:
- 5-azaC促进了终端多基化位点的使用,导致从缩短到全长mRNA的转录组范围的切换.
- 这种机制改变了瘤和癌细胞中替代的3'外显子的使用.
- 揭示了5-azaC在DNMT抑制之外对基因表达的新效应.
相关概念视频
Pre-mRNA Processing: Modification of pre-mRNA Ends
16.5K
In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps...
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps...
16.5K
pre-mRNA Processing
57.9K
In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl...
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a “cap” to the 5’ end of the growing transcript. In this process, a 5’ phosphate is replaced by modified guanosine that has a methyl group attached to it (7-Methyl...
57.9K
RACE - Rapid Amplification of cDNA Ends
7.5K
Rapid Amplification of cDNA Ends, or RACE, is one of the most effective methods to obtain a full-length cDNA from an mRNA sequence between a known internal region to the unknown sequence at the 5’ or 3’ end. The unknown region is cloned in the cDNA by a gene-specific primer that binds the known end, and a hybrid primer that attaches a predefined anchor sequence to the unknown end of the cDNA. The sequence in between is amplified by PCR with an anchor primer and a gene-specific...
7.5K
RNA Editing
10.0K
RNA editing is a post-transcriptional modification where a precursor mRNA (pre-mRNA) nucleotide sequence is changed by base insertion, deletion, or modification. The extent of RNA editing varies from a few hundred bases, in mitochondrial DNA of trypanosomes, to a just single base, in nuclear genes of mammals. Even a single base change in the pre-mRNA can convert a codon for one amino acid into the codon for another amino acid or a stop codon. This type of re-coding can significantly affect the...
10.0K
mRNA Stability and Gene Expression
6.8K
The structure and stability of mRNA molecules regulates gene expression, as mRNAs are a key step in the pathway from gene to protein. In eukaryotes, the half-life of mRNA varies from a few minutes up to several days. mRNA stability is essential in growth and development. The absence of the proteins regulating its stability, such as tristetraprolin in mice, can cause systemic issues, including bone marrow overgrowth, inflammation, and autoimmunity.
Cis-acting Elements involved in mRNA stability
Cis-acting Elements involved in mRNA stability
6.8K
Anaphase Promoting Complex
3.5K
The stepwise destruction of specific proteins is necessary for the progression and completion of the cell cycle. Such proteins are ubiquitinated by ubiquitin ligases and then subsequently destroyed by the proteasome. The SCF (Skp1/Cullin/F-box) and the anaphase-promoting complex (APC) are two important ubiquitin ligases involved in cell cycle progression. While SCF is active throughout the cell cycle, APC gets activated during metaphase to anaphase transition. Cdc20 or Cdh1 binds to APC and...
3.5K


