硫酸盐还原酶结构在1.6A:进化和催化减少无机离子
B R Crane1, L M Siegel, E D Getzoff
1Department of Molecular Biology, Scripps Research Institute, La Jolla, CA 92037, USA.
概括
研究人员确定了硫酸盐减少酶血蛋白 (SiRHP) 的结构,揭示了它如何催化硫和循环. 结构突出了酶功能和辅因子结合的关键特征,在这个重要的氧化还原酶中.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 酶学 是一种酶学.
背景情况:
- 硫酸盐和酸盐还原酶是生物地化学硫和循环中的关键步骤的催化剂.
- 了解它们的结构对于阐明它们的催化机制至关重要.
研究的目的:
- 确定大肠杆菌硫酸盐减少酶血蛋白 (SiRHP) 的晶体结构.
- 阐明酶在减少硫酸盐和酸盐中的催化活性的结构基础.
主要方法:
- 原生辅因子的多波长异常衍射 (MAD).
- 多重同型替代和甲胺标签用于分阶段.
- 通过X射线晶体学来解决3D结构.
主要成果:
- 64千达尔顿的SiRHP多呈现出具有双重对称性的三域α/β折叠.
- 锡罗海姆和Fe4S4集群辅因子的位置精确,锡罗海姆通过硫化物结合硫化物,在取代了酸离子后.
- 保存的同质区域确定了一个硫酸盐或酸盐还原酶重复 (SNiRR) 常见的氧化还原酶超级家族.
结论:
- 确定的结构为硫酸盐和酸盐减少的机制提供了原子层面的洞察力.
- 关键的残留物和结构特征,包括一个广泛的结网络,对于基质激活和催化是至关重要的.
- 这些发现有助于理解涉及至关重要的生物地球化学过程的氧化还原酶的广泛超级家族.
相关概念视频
Electron Transport Chain: Complex I and II
The mitochondrial electron transport chain (ETC) is the main energy generation system in the eukaryotic cells. However, mitochondria also produce cytotoxic reactive oxygen species (ROS) due to the large electron flow during oxidative phosphorylation. While Complex I is one of the primary sources of superoxide radicals, ROS production by Complex II is uncommon and may only be observed in cancer cells with mutated complexes.
ROS generation is regulated and maintained at moderate levels necessary...
ROS generation is regulated and maintained at moderate levels necessary...
Preparation and Reactions of Sulfides
Sulfides are the sulfur analog of ethers, just as thiols are the sulfur analog of alcohol. Like ethers, sulfides also consist of two hydrocarbon groups bonded to the central sulfur atom. Depending upon the type of groups present, sulfides can be symmetrical or asymmetrical. Symmetrical sulfides can be prepared via an SN2 reaction between 2 equivalents of an alkyl halide and one equivalent of sodium sulfide.
Oxidation and Reduction of Organic Molecules
Energy production within a cell involves many coordinated chemical pathways. Most of these pathways are combinations of oxidation and reduction reactions, which occur at the same time. An oxidation reaction strips an electron from an atom in a compound, and the addition of this electron to another compound is a reduction reaction. Because oxidation and reduction usually occur together, these pairs of reactions are called redox reactions.
The removal of an electron from a molecule, results in a...
The removal of an electron from a molecule, results in a...
Anoxygenic Photosynthesis
Anoxygenic photosynthesis is a phototrophic process that captures light energy to drive carbon fixation without producing molecular oxygen. Unlike oxygenic photosynthesis, which utilizes water as an electron donor and releases oxygen, anoxygenic phototrophs use alternative electron donors such as hydrogen sulfide (H₂S), elemental sulfur (S⁰), or thiosulfate (S₂O₃²⁻). This process is carried out by diverse groups of bacteria, including purple bacteria, green sulfur bacteria, heliobacteria, and...
Sulfur Assimilation
Sulfur is an essential element in biological systems, contributing to synthesizing key biomolecules, including amino acids such as cysteine and methionine, and cofactors such as coenzyme A and biotin. Microorganisms primarily assimilate sulfur as sulfate (SO₄²⁻) from the environment, which must undergo a series of biochemical transformations before it can be incorporated into cellular components. As sulfate is highly oxidized, it must undergo assimilatory sulfate reduction to become...
Microbes and the Sulfur Cycle
Sulfur is a vital element in Earth's biogeochemical systems. It transitions through various inorganic states, including sulfate (SO₄²⁻), elemental sulfur (S⁰), and sulfide (S²⁻). Abiotic and biological mechanisms across oxic and anoxic environments intricately mediate these transformations. Sulfate, the most oxidized form of sulfur, is predominantly stored in rocks, marine sediments, and oceanic waters, acting as a long-term reservoir in the global sulfur cycle.In oxic environments,...


![Protein Film Infrared Electrochemistry Demonstrated for Study of H2 Oxidation by a [NiFe] Hydrogenase](/_next/image?url=https%3A%2F%2Fcloudfront.jove.com%2FCDNSource%2Fteasers%2F55858.jpg&w=3840&q=50)