位点特异性重组酶玛三角溶解酶的晶体结构复杂,与34bp的裂变位点复杂
1Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520, USA.
Cell
|July 28, 1995
概括
马三角溶解酶显著曲DNA,揭示了新的结构细节. 这种DNA结合机制表明,在重组过程中出现了一系列的分裂过程.
科学领域:
- 结构生物学 结构生物学
- 分子生物学分子生物学
- 遗传学 是一个遗传学.
背景情况:
- 三角溶解酶调解DNA重组的过程.
- 了解它的结构-DNA相互作用对于破译它的功能至关重要.
研究的目的:
- 为了确定高分辨率的高分辨率结构的玛三角溶解酶与其DNA基质结合.
- 为了阐明DNA结合和曲的分子机制.
主要方法:
- 在3.0A分辨率的X射线晶体学.
- 对玛三角溶解酶和34bp的DNA基质的复杂结构确定.
主要成果:
- 在交叉点上,DNA基板被曲了60度.
- 溶解酶C端域形成DNA结合结构,围绕DNA小和大进行包裹.
- 解析酶二次体表现出不对称性,暗示着形状适应性.
结论:
- 确定的结构提供了对玛三角溶解酶的DNA结合和曲机制的见解.
- 观察到的不对称性和结构特征表明,在重组过程中可能存在一个序列的单链裂解机制.
相关概念视频
The Replisome
31.2K
DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with...
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with...
31.2K
Homologous Recombination
58.8K
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
58.8K
Restarting Stalled Replication Forks
5.1K
DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart,...
5.1K
Conservative Site-specific Recombination and Phase Variation
5.7K
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...
5.7K
Restriction Enzymes
31.4K
Restriction enzymes are bacterial enzymes used to cut DNA in a sequence-specific manner. To cleave DNA, they bind to specific palindromic sequences called restriction sites. Such palindromic DNA sequences or inverted repeats are commonly found in regions of functional significance, such as the origin of replication, gene operator sites, and regions containing transcription termination signals.
The host bacteria protect their own genomic DNA from these enzymes by methylating these sites. Some...
The host bacteria protect their own genomic DNA from these enzymes by methylating these sites. Some...
31.4K
Maxam-Gilbert Sequencing
10.5K
In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their chemical-cleavage method for DNA sequencing. The Maxam-Gilbert method relies on using different chemicals that can cleave the DNA sequence at specific sites, the separation of resulting DNA fragments of variable size using electrophoresis, and deciphering the DNA sequence from the resulting gel bands.
Challenges of the Maxam-Gilbert Method
The...
Challenges of the Maxam-Gilbert Method
The...
10.5K


