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Genome-wide Protein-protein Interaction Screening by Protein-fragment Complementation Assay (PCA) in Living Cells
Published on: March 3, 2015
Functional analysis of the human NRAMP family expressed in fission yeast
M Tabuchi1, T Yoshida, K Takegawa
1Centre for Gene Research, Yamaguchi University, 1-1-1 Minami-Kogushi, Ube, Yamaguchi 755-8505, Japan.
Abstract:
The Bcg/Ity/Lsh locus in the mouse genome regulates macrophage activation for antimicrobial activity against intracellular pathogens, and the positional cloning of this locus identified the Nramp1 (natural resistance-associated macrophage protein) gene. Nramp2 was initially isolated as a homologue of Nramp1. Recently, the rat divalent metal transporter DMT1 was identified electrophysiologically, and was found to be an isoform of Nramp2, a mutation which was subsequently identified in rats suffering from hereditary iron-deficiency anaemia. Despite the 64% amino acid sequence identity of Nramp1 and Nramp2, no divalent metal transport activity has yet been detected from Nramp1, and the function of Nramp1 on the molecular level is still unclear. To investigate the divalent metal transport activity of NRAMP molecules, we constructed four chimeric NRAMP genes by swapping the domains of human NRAMP1 and NRAMP2 with each other. The functional characteristics of wild-type NRAMP1, NRAMP2 and their chimeras were determined by expression in the divalent metal transporter-disrupted strain of fission yeast, pdt1Delta, and we analysed the divalent metal transport activity by complementation of the EGTA- and pH-sensitive phenotype of pdt1Delta. Replacement of the N-terminal cytoplasmic domain of NRAMP2 with the NRAMP1 counterpart resulted in inactive chimeras, indicating that the functional difference between NRAMP1 and NRAMP2 is located in this region. However, results obtained with the reverse construct and other chimeras indicated that these regions are not solely responsible for the differences in EGTA- and pH-sensitivity of NRAMP1 and NRAMP2. These findings indicate that NRAMP1 itself cannot represent the divalent metal transport activity in S. pombe and the additional protein segments of the molecules located elsewhere in NRAMP1 are also functionally distinct from their NRAMP2 counterparts.
Insights
Investigating natural resistance-associated macrophage protein (NRAMP) function revealed that NRAMP1 and NRAMP2 differ in divalent metal transport. The N-terminal domain is key, but other regions also contribute to functional distinctions.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- The NRAMP1 gene regulates macrophage antimicrobial activity.
- NRAMP2 is a homologue of NRAMP1 and an isoform of DMT1, linked to iron-deficiency anemia.
- The precise molecular function of NRAMP1, particularly its divalent metal transport activity, remains unclear despite significant sequence identity with NRAMP2.
Purpose of the Study:
- To investigate the divalent metal transport activity of NRAMP1 and NRAMP2.
- To identify the functional domains responsible for differences between NRAMP1 and NRAMP2.
- To elucidate the molecular function of NRAMP1.
Main Methods:
- Construction of four chimeric NRAMP genes by domain swapping between human NRAMP1 and NRAMP2.
- Functional characterization of wild-type and chimeric NRAMP genes expressed in a divalent metal transporter-disrupted fission yeast strain (pdt1Δ).
- Analysis of divalent metal transport activity through complementation of the EGTA- and pH-sensitive phenotype of pdt1Δ.
Main Results:
- Chimeras with the NRAMP1 N-terminal cytoplasmic domain replacing the NRAMP2 counterpart were inactive, suggesting this region dictates functional differences.
- Reverse constructs and other chimeras indicated that the N-terminal domain alone does not solely account for the observed differences in EGTA and pH sensitivity.
- NRAMP1 does not appear to mediate divalent metal transport in S. pombe independently; other protein segments distinct from NRAMP2 also contribute to functional differences.
Conclusions:
- The N-terminal cytoplasmic domain plays a critical role in the functional divergence of NRAMP1 and NRAMP2 regarding divalent metal transport.
- Functional differences between NRAMP1 and NRAMP2 are complex, involving contributions from multiple protein segments beyond the N-terminal domain.
- NRAMP1's molecular function is distinct from divalent metal transport in S. pombe, implying alternative or additional roles.
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