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Updated: Aug 6, 2026

Pooled shRNA Screen for Reactivation of MeCP2 on the Inactive X Chromosome
Published on: March 2, 2018
Rett syndrome and beyond: recurrent spontaneous and familial MECP2 mutations at CpG hotspots
1Department of Genetics, Stanford University Medical Center, Stanford, CA 94305-5323, USA.
Insights
Mutations in the methyl-CpG binding protein 2 (MECP2) gene cause Rett syndrome (RTT) and a wider range of neurodevelopmental disorders. These MECP2 mutations present diverse phenotypes beyond classic RTT.
Area of Science:
- Genetics
- Neuroscience
- Developmental Biology
Background:
- Rett syndrome (RTT) is a neurodevelopmental disorder affecting infant girls, characterized by skill loss after normal development.
- The methyl-CpG binding protein 2 (MECP2) gene has been identified as the cause of RTT.
Purpose of the Study:
- To investigate the spectrum of phenotypes associated with mutations in the MECP2 gene.
- To explore the relationship between different MECP2 mutations and their clinical manifestations.
Main Methods:
- Analysis of MECP2 gene mutations, including nonsense and missense variants.
- Identification of nucleotide substitutions and deletions at critical functional domains of MeCP2.
- Correlation of specific mutations with observed clinical phenotypes in affected individuals.
Main Results:
- Identified recurrent nonsense (R168X, R255X) and missense (R106W, R306C) MECP2 mutations.
- Found de novo missense mutations affecting conserved MeCP2 domains, often involving C-->T transitions at CpG hotspots.
- Observed a broader phenotypic spectrum, including RTT, incontinentia pigmenti, motor coordination issues, learning disabilities, and congenital encephalopathy, linked to various MECP2 mutations.
Conclusions:
- MECP2 mutations are not exclusively linked to Rett syndrome and are implicated in a wider range of neurodevelopmental disorders.
- Some males with MECP2 mutations may survive to birth, and female carriers with skewed X-inactivation may exhibit milder symptoms.
- Understanding the full phenotypic spectrum of MECP2 mutations is crucial for accurate diagnosis and genetic counseling.
Abstract:
Rett syndrome (RTT) is a neurodevelopmental disorder characterized by loss of acquired skills after a period of normal development in infant girls. The responsible gene, encoding methyl-CpG binding protein 2 (MeCP2), was recently discovered. Here we explore the spectrum of phenotypes resulting from MECP2 mutations. Both nonsense (R168X and R255X) and missense (R106W and R306C) mutations have been found, with multiple recurrences. R168X mutations were identified in six unrelated sporadic cases, as well as in two affected sisters and their normal mother. The missense mutations were de novo and affect conserved domains of MeCP2. All of the nucleotide substitutions involve C-->T transitions at CpG hotspots. A single nucleotide deletion, at codon 137, that creates a L138X stop codon within the methyl-binding domain was found in an individual with features of RTT and incontinentia pigmenti. An 806delG deletion causing a V288X stop in the transcription-repression domain was identified in a woman with motor-coordination problems, mild learning disability, and skewed X inactivation; in her sister and daughter, who were affected with classic RTT; and in her hemizygous son, who died from congenital encephalopathy. Thus, some males with RTT-causing MECP2 mutations may survive to birth, and female heterozygotes with favorably skewed X-inactivation patterns may have little or no involvement. Therefore, MECP2 mutations are not limited to RTT and may be implicated in a much broader phenotypic spectrum.
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