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The RESID database of protein structure modifications: 2000 update.

J S Garavelli1

  • 1National Biomedical Research Foundation, Protein Information Resource, Washington, DC 20007, USA. garavelli@nbrf.georgetown.edu

Nucleic Acids Research
|December 11, 1999
PubMed
Summary
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The RESID Database of protein structure modifications.

Nucleic acids research·1998

The RESID Database provides comprehensive data on post-translational modifications, enhancing protein sequence annotations. This valuable resource is freely accessible online for researchers.

Area of Science:

  • Biochemistry
  • Bioinformatics
  • Proteomics

Background:

  • Standardized protein annotations require detailed information on post-translational modifications.
  • The PIR-International Protein Sequence Database relies on supplemental data for comprehensive annotation.

Purpose of the Study:

  • To describe the RESID Database, a crucial resource for post-translational modification information.
  • To highlight the content and accessibility of the RESID Database.

Main Methods:

  • Compiling and maintaining a comprehensive database of post-translational modifications.
  • Integrating systematic names, chemical identifiers, formulas, weights, and enzyme activities.
  • Including structural diagrams, molecular models, and literature citations.

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Main Results:

  • The RESID Database offers extensive details on various modifications, including N-terminal, C-terminal, and cross-links.
  • It provides multiple access points, including systematic and alternate names, and Chemical Service registry numbers.
  • Regular updates (weekly) and full releases (quarterly) ensure data currency.

Conclusions:

  • The RESID Database serves as a vital, freely accessible resource for protein modification data.
  • Its detailed annotations and regular updates support standardized protein sequence analysis.
  • Researchers can readily access this information via the PIR website or FTP for enhanced studies.