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[Likeness: a system for rapid retrieval of similar conformation of proteins and their spatial structures]
M P Ponomarkenko1, I Shindialov, P Bourne
1Institute of Cytology and Genetics, Russian Academy of Sciences, Novosibirsk, Russia.
Biofizika
|January 7, 2000
Abstract:
We report a method for estimating the conformational likeness between any two proteins. Likeness is handled in terms of stochastic geometry, fuzzy logic and decision making theories. Using the method, a computer system LIKENESS was developed. The system does "real time" searching and spatial alignment of any PDB-available proteins. LIKENESS is accessible at URL: "http:@cl.sdsc.edu/".