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Updated: Aug 12, 2026

Conjugative Mating Assays for Sequence-specific Analysis of Transfer Proteins Involved in Bacterial Conjugation
Published on: January 4, 2017
TrfA-dependent inner membrane-associated plasmid RK2 DNA synthesis and association of TrfA with membranes of
T Banack1, P D Kim, W Firshein
1Department of Molecular Biology and Biochemistry, Wesleyan University, Middletown, Connecticut 06459, USA.
Abstract:
TrfA, the replication initiator protein of broad-host-range plasmid RK2, was tested for its ability to bind to the membrane of four different gram-negative hosts in addition to Escherichia coli: Pseudomonas aeruginosa, Pseudomonas putida, Salmonella enterica serovar Typhimurium, and Rhodobacter sphaeroides. Cells harboring TrfA-encoding plasmids were fractionated into soluble, inner membrane, and outer membrane fractions. The fractions were subjected to Western blotting, and the blots were probed with antibody to the TrfA proteins. TrfA was found to fractionate with the cell membranes of all species tested. When the two membrane fractions of these species were tested for their ability to synthesize plasmid DNA endogenously (i.e., without added template or enzymes), only the inner membrane fraction was capable of extensive synthesis that was inhibited by anti-TrfA antibody in a manner similar to that of the original host species, E. coli. In addition, although DNA synthesis did occur in the outer membrane fraction, it was much less extensive than that exhibited by the inner membrane fraction and only slightly affected by anti-TrfA antibody. Plasmid DNA synthesized by the inner membrane fraction of one representative species, P. aeruginosa, was characteristic of supercoil and intermediate forms of the plasmid. Extensive DNA synthesis was observed in the soluble fraction of another representative species, R. sphaeroides, but it was completely unaffected by anti-TrfA antibody, suggesting that such synthesis was due to repair and/or nonspecific chain extension of plasmid DNA fragments.
Insights
The replication initiator protein TrfA binds to bacterial cell membranes across multiple gram-negative species. DNA replication initiated by TrfA primarily occurs within the inner membrane, crucial for plasmid maintenance.
Area of Science:
- Molecular Biology
- Microbiology
- Genetics
Background:
- Broad-host-range plasmid RK2 relies on the replication initiator protein TrfA for its propagation.
- Understanding TrfA's host interactions is key to plasmid stability and transfer.
- Previous studies focused on Escherichia coli, necessitating broader host investigation.
Purpose of the Study:
- To investigate the membrane binding capabilities of TrfA in diverse Gram-negative bacteria.
- To determine the specific cellular fraction responsible for TrfA-mediated DNA synthesis.
- To assess the functional role of TrfA in endogenous plasmid DNA replication across species.
Main Methods:
- Fractionation of bacterial cells (E. coli, P. aeruginosa, P. putida, S. Typhimurium, R. sphaeroides) into soluble, inner membrane, and outer membrane components.
- Western blotting using anti-TrfA antibodies to detect TrfA protein localization.
- Assay of endogenous DNA synthesis in cellular fractions, assessing inhibition by anti-TrfA antibody.
Main Results:
- TrfA was consistently found associated with cell membranes in all tested Gram-negative species.
- Significant endogenous plasmid DNA synthesis occurred exclusively in the inner membrane fraction, inhibited by anti-TrfA antibody.
- Outer membrane DNA synthesis was minimal and unaffected by the antibody, while soluble fraction synthesis in R. sphaeroides was non-specific.
Conclusions:
- TrfA's membrane association is conserved across diverse Gram-negative hosts.
- The inner membrane is the primary site for TrfA-dependent plasmid DNA replication.
- These findings highlight the conserved mechanism of plasmid replication initiation involving bacterial membranes.
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