TrfA-dependent inner membrane-associated plasmid RK2 DNA synthesis and association of TrfA with membranes of

T Banack1, P D Kim, W Firshein

  • 1Department of Molecular Biology and Biochemistry, Wesleyan University, Middletown, Connecticut 06459, USA.

Insights

The replication initiator protein TrfA binds to bacterial cell membranes across multiple gram-negative species. DNA replication initiated by TrfA primarily occurs within the inner membrane, crucial for plasmid maintenance.

Area of Science:

  • Molecular Biology
  • Microbiology
  • Genetics

Background:

  • Broad-host-range plasmid RK2 relies on the replication initiator protein TrfA for its propagation.
  • Understanding TrfA's host interactions is key to plasmid stability and transfer.
  • Previous studies focused on Escherichia coli, necessitating broader host investigation.

Purpose of the Study:

  • To investigate the membrane binding capabilities of TrfA in diverse Gram-negative bacteria.
  • To determine the specific cellular fraction responsible for TrfA-mediated DNA synthesis.
  • To assess the functional role of TrfA in endogenous plasmid DNA replication across species.

Main Methods:

  • Fractionation of bacterial cells (E. coli, P. aeruginosa, P. putida, S. Typhimurium, R. sphaeroides) into soluble, inner membrane, and outer membrane components.
  • Western blotting using anti-TrfA antibodies to detect TrfA protein localization.
  • Assay of endogenous DNA synthesis in cellular fractions, assessing inhibition by anti-TrfA antibody.

Main Results:

  • TrfA was consistently found associated with cell membranes in all tested Gram-negative species.
  • Significant endogenous plasmid DNA synthesis occurred exclusively in the inner membrane fraction, inhibited by anti-TrfA antibody.
  • Outer membrane DNA synthesis was minimal and unaffected by the antibody, while soluble fraction synthesis in R. sphaeroides was non-specific.

Conclusions:

  • TrfA's membrane association is conserved across diverse Gram-negative hosts.
  • The inner membrane is the primary site for TrfA-dependent plasmid DNA replication.
  • These findings highlight the conserved mechanism of plasmid replication initiation involving bacterial membranes.

Related Concept Videos

Rab Proteins01:14

Rab Proteins

Rab proteins constitute the largest family of monomeric GTPases, of which 70 members are present in humans. Rab proteins and their effectors regulate consecutive stages of vesicle transport such as vesicle transport, docking, and fusion to the correct recipient membrane.
Rab proteins switch between a cytosolic, GDP-bound inactive state and a membrane-anchored, GTP-bound active state. By themselves, Rabs show slow rates of GDP/GTP exchange and GTP hydrolysis. Thus, Rab proteins are considered...
Cotranslational Protein Translocation01:20

Cotranslational Protein Translocation

Translocation of proteins across membranes is an ancient process that occurs even in bacteria and archaebacteria. In fact, the components of the translocation machinery are still conserved between prokaryotes and eukaryotes.
Sec61 channel partners for cotranslational translocation
During cotranslational translocation, the Sec61 channel partners with the signal recognition particle (SRP), the signal recognition particle receptor (SR), and the ribosomes to transport the nascent polypeptide chain...
Tail-anchoring of Proteins in the ER Membrane01:45

Tail-anchoring of Proteins in the ER Membrane

Tail-anchored, or TA, proteins are estimated to make up to 3-5% of membrane proteins found in the eukaryotic cell. Such proteins have a single transmembrane domain located approximately 30 amino acid residues upstream from the C-terminal end. As a result, the signal recognition particle (SRP) cannot guide a TA protein to the ER membrane for cotranslational insertion. Hence, they are integrated into the ER membrane post-translationally using their C-terminal end as the anchor. TA proteins...
Rab Cascades01:25

Rab Cascades

Rab GTPases act in a regulated cascade during membrane fusion, helping the lipid bilayers mix. The Rab family of proteins are active when bound to GTP, and inactive when bound to GDP. Hence, they act as guanine nucleotide-dependent molecular switches. Rab-GTP recognizes and binds to long or short-range tethering proteins to capture the target vesicle. These tethers coordinate with SNAREs on the vesicle and the target membrane to assemble the trans SNARE complex that locks the mixing bilayers.
Bacterial Translocation and Protein Secretion01:26

Bacterial Translocation and Protein Secretion

Bacterial protein secretion involves translocation systems to ensure proteins reach their designated locations, including the plasma membrane, periplasm, outer membrane, or the external environment. These translocation systems are vital for bacterial physiology, supporting processes like membrane assembly, enzymatic activity in the periplasm, and interactions with the external environment. The division of labor between Sec and Tat pathways ensures efficiency in handling proteins with diverse...
Mechanism of Conjugation01:19

Mechanism of Conjugation

Bacterial conjugation is a mechanism of horizontal gene transfer that enables the exchange of genetic material between bacterial cells through direct contact. This process is facilitated by a donor cell carrying a conjugative plasmid, which encodes genes necessary for pilus formation, DNA replication, and transfer. The conjugative plasmid plays a central role in initiating and executing the transfer of genetic material.The tra region of the conjugative plasmid encodes proteins responsible for...