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MAD: a suite of tools for microarray data management and processing.

B Liao1, W Hale, C B Epstein

  • 1Center for Biomedical Inventions, University of Texas Southwestern Medical Center at Dallas, 5323 Harry Hines Blvd, Dallas, TX 75390, USA.

Bioinformatics (Oxford, England)
|December 20, 2000
PubMed
Summary

Microarray Data Management and Processing (MAD) software offers integrated tools for Windows users to manage, process, and analyze microarray data. This comprehensive suite facilitates data storage, manipulation, and preparation for cluster analysis.

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Area of Science:

  • Bioinformatics
  • Computational Biology
  • Genomics

Background:

  • Microarray technology generates large datasets requiring specialized management.
  • Existing tools may lack integration for comprehensive data processing.

Purpose of the Study:

  • To introduce Microarray Data Management and Processing (MAD) software.
  • To provide an integrated solution for microarray data analysis.

Main Methods:

  • Development of a Windows-integrated software suite.
  • Implementation of a relational database for data storage.
  • Inclusion of user-interfaces for data manipulation.
  • Integration of text file parsers and Excel macros for automation.
  • Development of a generator for cluster analysis-ready files.

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Main Results:

  • MAD provides a unified platform for microarray data handling.
  • The software automates key data processing steps.
  • Output files are optimized for downstream cluster analysis.

Conclusions:

  • MAD software offers a comprehensive and user-friendly solution for microarray data management and processing.
  • The integrated approach streamlines the analysis workflow.
  • The software is freely available, promoting accessibility in research.