Related Experiment Videos
Plasminogen activator inhibitor type 2 contains mRNA instability elements within exon 4 of the coding region.
1Department of Medicine, Monash University, Box Hill Hospital, Box Hill 3128, Victoria, Australia.
Abstract:
Plasminogen activator inhibitor type 2 (PAI-2) is a serine protease inhibitor that inhibits urokinase. Constitutive and regulated PAI-2 gene expression involves post-transcriptional events, and an AU-rich mRNA instability motif within the 3'-untranslated region of PAI-2 mRNA is required for this process (Maurer, F., Tierney, M., and Medcalf, R. L. (1999) Nucleic Acids Res. 27, 1664-1673). Here we show that instability determinants are present within various exons of the PAI-2 coding region, most notably within exon 4. Deletion of exon 4 from the full-length PAI-2 cDNA results in a doubling in the half-life of PAI-2 mRNA, whereas a 28-nucleotide region within exon 4 contains binding sites for cytoplasmic proteins. Inducible stabilization of PAI-2 mRNA in HT-1080 cells treated with phorbol ester and tumor necrosis factor does not alter the binding of proteins to the exon 4 instability determinant, but resulted in a transient increase in the binding of factors to the AU-rich RNA instability element. Hence, PAI-2 mRNA stability is influenced by elements located within both the coding region and the 3'-untranslated region and that cytoplasmic mRNA binding factors may influence steady state and inducible PAI-2 mRNA expression. Finally a 10-nucleotide region flanking the exon 4 protein-binding site is homologous to instability elements within five other transcripts, suggesting that a common coding region determinant may exist.
Insights
Plasminogen activator inhibitor type 2 (PAI-2) mRNA stability is regulated by elements in both coding and non-coding regions. Exon 4 and AU-rich elements bind proteins, influencing PAI-2 gene expression.
Area of Science:
- Molecular Biology
- Gene Regulation
Background:
- Plasminogen activator inhibitor type 2 (PAI-2) is a serine protease inhibitor.
- PAI-2 gene expression is regulated post-transcriptionally, involving mRNA stability.
- AU-rich elements in the 3'-untranslated region (UTR) are known to affect PAI-2 mRNA stability.
Purpose of the Study:
- To investigate novel determinants of PAI-2 mRNA stability within its coding region.
- To identify specific sequences and protein interactions that regulate PAI-2 mRNA half-life.
Main Methods:
- Deletion analysis of PAI-2 cDNA, specifically exon 4.
- RNA-protein binding assays using cytoplasmic extracts.
- Analysis of PAI-2 mRNA stabilization in response to cellular stimuli (phorbol ester, TNF).
Main Results:
- Instability determinants were identified within the coding exons of PAI-2, particularly exon 4.
- Deletion of exon 4 significantly increased PAI-2 mRNA half-life.
- A 28-nucleotide region in exon 4 binds cytoplasmic proteins, and this binding is distinct from the AU-rich element binding.
- Inducible mRNA stabilization involved transient changes in binding to the AU-rich element, not the exon 4 determinant.
Conclusions:
- PAI-2 mRNA stability is controlled by elements in both coding (exons) and 3'-UTR regions.
- Cytoplasmic mRNA-binding factors play a role in both basal and inducible PAI-2 mRNA expression.
- A conserved coding region instability element may exist, suggested by homology to other transcripts.