Related Experiment Video
Updated: Aug 8, 2026

12:05
Production of Disulfide-stabilized Transmembrane Peptide Complexes for Structural Studies
Published on: March 6, 2013
Nonnative intermediate state of acid-stable beta-sheet protein
J J Yang1, A R Carroll, W Yang
1Department of Chemistry and Center for Drug Design, Georgia State University, Atlanta 30303, USA. chejjy@panther.gsu.edu
Cell Biochemistry and Biophysics
|April 28, 2001
Summary
The N-terminal domain 1 of CD2 (CD2-1) maintains its structure across a wide pH range but unfolds in TFE, revealing insights into protein folding and cell adhesion.
Area of Science:
- Protein structure and function
- Immunology
- Biochemistry
Background:
- CD2 is a cell adhesion molecule from the immunoglobulin superfamily, vital for immune cell interactions.
- It plays a key role in cell-cell adhesion through its Ig-like domains.
Purpose of the Study:
- To investigate the structural stability of the N-terminal domain 1 of CD2 (CD2-1) under varying pH and chemical conditions.
- To elucidate the factors contributing to the Ig beta-structure of CD2-1.
Main Methods:
- Near- and far-UV circular dichroism (CD) spectroscopy
- Fluorescence spectroscopy
- 1H nuclear magnetic resonance (NMR) spectroscopy
Main Results:
- CD2-1 retains its native tertiary structure from pH 1.0 to 10.0.
- 2,2,2-trifluoroethanol (TFE) disrupts tertiary structure and induces an alpha-helical conformation, correlating with inherent primary sequence helicity.
- Electrostatic interactions are less critical for native structure but vital for adhesion function; hydrophobic and hydrogen-bonding disruptions significantly alter conformation.
Conclusions:
- CD2-1's native structure is robust across a broad pH range.
- Hydrophobic interactions and hydrogen bonds are critical for maintaining CD2-1's conformation.
- Conformational flexibility in CD2-1 residues may facilitate domain-swapping and dimer formation.
Related Concept Videos
Protein Organization
Overview
Protein Folding
Overview
Protein Folding
Overview
Amyloid Fibrils
Amyloid fibrils are aggregates of misfolded proteins. Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils.
Amyloid deposits were observed as early as 1639 in the liver and the spleen. In 1854, Rudolph Virchow performed iodine staining, normally used to...
Amyloid deposits were observed as early as 1639 in the liver and the spleen. In 1854, Rudolph Virchow performed iodine staining, normally used to...
Protein Organization
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence.
The primary structure of a protein is its amino acid sequence.
Protein Folding
Proteins are chains of amino acids linked together by peptide bonds. Upon synthesis, a protein folds into a three-dimensional conformation, critical to its biological function. Interactions between its constituent amino acids guide protein folding, and hence the protein structure is primarily dependent on its amino acid sequence.
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...
Protein Structure Is Critical to Its Biological Function
Proteins perform a wide range of biological functions such as catalyzing chemical reactions, providing...

