Related Experiment Video

Updated: Aug 6, 2026

ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data
05:12

ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data

Published on: January 16, 2019

Visualization of expression clusters using Sammon's non-linear mapping

R M Ewing1, J M Cherry

  • 1Carnegie Institution of Washington, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA. ewing@genome.stanford.edu

Bioinformatics (Oxford, England)
|July 13, 2001
PubMed

Abstract:

A method of exploratory analysis and visualization of multi-dimensional gene expression data using Sammon's Non-Linear Mapping (NLM) is presented.

More Related Videos

Visualization and Quantification of High-Dimensional Cytometry Data using Cytofast and the Upstream Clustering Methods FlowSOM and Cytosplore
06:01

Visualization and Quantification of High-Dimensional Cytometry Data using Cytofast and the Upstream Clustering Methods FlowSOM and Cytosplore

Published on: December 12, 2019

Applying Hyperspectral Reflectance Imaging to Investigate the Palettes and the Techniques of Painters
07:05

Applying Hyperspectral Reflectance Imaging to Investigate the Palettes and the Techniques of Painters

Published on: June 18, 2021

Related Experiment Videos

Last Updated: Aug 6, 2026

ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data
05:12

ExCYT: A Graphical User Interface for Streamlining Analysis of High-Dimensional Cytometry Data

Published on: January 16, 2019

Visualization and Quantification of High-Dimensional Cytometry Data using Cytofast and the Upstream Clustering Methods FlowSOM and Cytosplore
06:01

Visualization and Quantification of High-Dimensional Cytometry Data using Cytofast and the Upstream Clustering Methods FlowSOM and Cytosplore

Published on: December 12, 2019

Applying Hyperspectral Reflectance Imaging to Investigate the Palettes and the Techniques of Painters
07:05

Applying Hyperspectral Reflectance Imaging to Investigate the Palettes and the Techniques of Painters

Published on: June 18, 2021

Related Concept Videos

Cluster Sampling Method01:20

Cluster Sampling Method

Appropriate sampling methods ensure that samples are drawn without bias and accurately represent the population. Because measuring the entire population in a study is not practical, researchers use samples to represent the population of interest.
To choose a cluster sample, divide the population into clusters (groups) and then randomly select some of the clusters. All the members from these clusters are in the cluster sample. For example, if you randomly sample four departments from your...
Scatter Plot01:15

Scatter Plot

The most common and easiest way to display the relationship between two variables, x and y, is a scatter plot. A scatter plot shows the direction of a relationship between the variables. A clear direction happens when there is either:
Confocal Fluorescence Microscopy01:16

Confocal Fluorescence Microscopy

Confocal microscopy is an advanced microscopic technique. The prime advantage of the confocal microscope over other microscopy techniques is its ability to block the out-of-focus light from the illuminated samples using pinholes. It is widely used with fluorescence optics to obtain high-resolution, sharp contrast images. Unlike optical microscopes, confocal microscopes use a focused beam of light laser to scan the entire sample surface at different z-planes. These microscopes are, therefore,...

Articles linked to this work by shared authors, journal, and citation graph.

ELF3 is an antagonist of oncogenic-signalling-induced expression of EMT-TF ZEB1.

Cancer biology & therapy·2018

Providing Access to Genomic Variant Knowledge in a Healthcare Setting: A Vision for the ClinGen Electronic Health Records Workgroup.

Clinical pharmacology and therapeutics·2015

Integrated analysis of the Wnt responsive proteome in human cells reveals diverse and cell-type specific networks.

Molecular bioSystems·2013

Gene Ontology annotations and resources.

Nucleic acids research·2012

Computer manipulation of DNA and protein sequences.

Current protocols in molecular biology·2008

Characteristics of amino acids.

Current protocols in molecular biology·2008

Microenvironment Awareness Pragmatic Analysis for Generative Enzyme Function Reasoning.

Bioinformatics (Oxford, England)·2026

Representation-aware conformal prediction for reliable uncertainty quantification in drug-target affinity.

Bioinformatics (Oxford, England)·2026

CryoTriplane: Triplane-based Neural Radiance Field Representation for High-resolution Cryo-EM 3D Homogeneous Reconstruction.

Bioinformatics (Oxford, England)·2026

Inverse probability weighting-based mediation analysis for microbiome data.

Bioinformatics (Oxford, England)·2026

Seumetry: a versatile and comprehensive R toolkit to accelerate high-dimensional flow and mass cytometry data analysis.

Bioinformatics (Oxford, England)·2026

Efficient and scalable Python implementation of ANCOM-BC and ANCOM-BC2 for omics differential abundance testing.

Bioinformatics (Oxford, England)·2026

RiboBA: a bias-aware probabilistic framework for robust ORF identification across diverse ribosome profiling protocols.

Nucleic acids research·2026

scDGCN: A Graph-Based Deep Clustering Framework for Single-Cell Transcriptomics via Neighborhood-Enhanced Context Representation Learning.

Interdisciplinary sciences, computational life sciences·2026

Interpretable AI model reveals spatial codes of cell recruitment in tissues.

Nature biomedical engineering·2026

BioText-SeqFormer: Integrating biomedical semantic representations and protein sequence embeddings for TCR-peptide interaction prediction.

Computational biology and chemistry·2026

Operational integration of FT-IR spectroscopy into a genomics-based surveillance algorithm for Listeria monocytogenes.

Microbiology spectrum·2026

FAMUS: A Few-Shot Learning Framework for Large-Scale Protein Annotation.

Bioinformatics (Oxford, England)·2026
See all related articles
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies
Jove
Visualize
Contact Us