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Updated: Aug 17, 2026

Defining Substrate Specificities for Lipase and Phospholipase Candidates
Published on: November 23, 2016
Molecular characterization of a phosphatidylcholine-hydrolyzing phospholipase C
I Preuss1, I Kaiser, U Gehring
1Ruprecht-Karls-Universität Heidelberg, Biochemie-Zentrum Heidelberg, Biologische Chemie, Heidelberg, Germany.
Abstract:
While searching for a phospholipase C (PLC) specific for phosphatidylcholine in mammalian tissues, we came across such an activity originating from a contamination of Pseudomonas fluorescens. This psychrophilic bacterium was found to contaminate placental extracts upon processing in the cold. The secreted phosphatidylcholine-hydrolyzing PLC was purified by a combination of chromatographic procedures. As substrates, the enzyme preferred dipalmitoyl-phosphatidylcholine and 1-palmitoyl-2-arachidonoyl-phosphatidylcholine over phosphatidylinositol. The active enzyme is a monomer of approximately 40 kDa. As for other bacterial PLCs, the enzyme requires Ca2+ and Zn2+ for activity; dithiothreitol affected the activity due to its chelation of Zn2+, but this inhibition could be compensated for by addition of ZnCl2. The compound D609, described to selectively inhibit phosphatidylcholine-specific PLCs, caused half-inhibition of the P. fluorescens enzyme at approximately 420 microM, while 50-fold lower concentrations similarly affected PLCs from Bacillus cereus and Clostridium perfringens. Partial peptide sequences obtained from the pure P. fluorescens enzyme after tryptic cleavage were used to clone a DNA fragment of 3.5 kb from a P. fluorescens gene library prepared from our laboratory isolate. It contains an ORF of 1155 nucleotides encoding the PLC. There is no significant sequence homology to other PLCs, suggesting that the P. fluorescens enzyme represents a distinct subclass of bacterial PLCs. The protein lacks cysteine residues and consequently contains no disulfide bonds. Interestingly, P. fluorescens reference strain DSMZ 50090 is devoid of the PLC activity described here as well as of the relevant coding sequence.
Insights
A novel phosphatidylcholine-specific phospholipase C (PLC) was identified in Pseudomonas fluorescens contamination. This bacterial enzyme, distinct from mammalian forms, offers new insights into bacterial enzyme subclasses and their unique properties.
Area of Science:
- Microbiology
- Enzymology
- Biochemistry
Background:
- Phospholipase C (PLC) enzymes are crucial in cellular signaling.
- A specific PLC for phosphatidylcholine in mammalian tissues was sought.
- Contamination in placental extracts led to the discovery of a novel bacterial PLC.
Purpose of the Study:
- To purify and characterize a phosphatidylcholine-specific phospholipase C (PLC) from a Pseudomonas fluorescens contaminant.
- To determine the enzyme's substrate specificity, molecular weight, and cofactor requirements.
- To investigate the enzyme's genetic basis and its relationship to other known bacterial PLCs.
Main Methods:
- Purification of the secreted PLC using chromatographic techniques.
- Enzyme activity assays with various phosphatidylcholine substrates.
- Biochemical characterization including cofactor dependency and inhibition studies.
- Peptide sequencing and molecular cloning to identify the encoding gene.
Main Results:
- A 40 kDa monomeric PLC from P. fluorescens was purified, preferring specific phosphatidylcholine substrates over phosphatidylinositol.
- The enzyme requires Ca2+ and Zn2+ for activity, with dithiothreitol inhibition reversible by ZnCl2.
- The cloned P. fluorescens PLC gene shows no significant homology to other PLCs, suggesting a distinct subclass.
- The P. fluorescens reference strain lacks this PLC activity and its coding sequence.
Conclusions:
- Pseudomonas fluorescens secretes a unique phosphatidylcholine-specific phospholipase C.
- This enzyme represents a distinct subclass of bacterial PLCs with unique biochemical properties.
- The findings expand our understanding of bacterial enzyme diversity and specificity.
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