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SubtiList: the reference database for the Bacillus subtilis genome.

Ivan Moszer1, Louis M Jones, Sandrine Moreira

  • 1Unité de Génétique des Génomes Bactériens and Logiciels et Banques de Données, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France. moszer@pasteur.fr

Nucleic Acids Research
|December 26, 2001
PubMed
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SubtiList is a curated database for the Bacillus subtilis 168 genome, offering updated DNA/protein sequences and functional annotations. It aids researchers in exploring bacterial genomics and gene functions.

Area of Science:

  • Microbiology
  • Genomics
  • Bioinformatics

Background:

  • Bacillus subtilis 168 is a model organism for Gram-positive bacteria.
  • A comprehensive genome database is crucial for studying bacterial genetics.

Purpose of the Study:

  • To present SubtiList, a dedicated reference database for the Bacillus subtilis 168 genome.
  • To provide a curated and continuously updated resource for genomic information.

Main Methods:

  • Development of a generic relational data schema (GenoList).
  • Implementation of a World Wide Web interface for data browsing and querying.
  • Integration of sequence corrections and functional annotations linked to bibliographic references.

Main Results:

Related Experiment Videos

  • SubtiList offers a curated dataset of DNA and protein sequences for Bacillus subtilis 168.
  • The database includes updated gene functions, products, and relevant literature.
  • Sequence corrections have been incorporated into the reference genome.

Conclusions:

  • SubtiList serves as a valuable, accessible resource for Bacillus subtilis genomics research.
  • The GenoList platform facilitates easy access and analysis of bacterial genome data.
  • Continuous updates ensure the database remains a reliable reference for the scientific community.