Related Experiment Video
Updated: Jul 12, 2026

Monitoring Equilibrium Changes in RNA Structure by 'Peroxidative' and 'Oxidative' Hydroxyl Radical Footprinting
Published on: October 17, 2011
Using equilibrium isotope effects to detect intramolecular OH/OH hydrogen bonds: structural and solvent effects
Thomas E Vasquez1, Jon M Bergset, Matthew B Fierman
1Department of Chemistry, Pomona College, 645 North College Avenue, Claremont, CA 91711, USA.
Intramolecular hydrogen bonds exhibit opposite isotope shift signs in different solvents. Deuterium prefers intermolecular bonds, and pyridine-d(5) amplifies shifts for configuration assignment.
Area of Science:
- Nuclear Magnetic Resonance Spectroscopy
- Physical Organic Chemistry
- Supramolecular Chemistry
Background:
- Intramolecular hydrogen bonds in diols influence their chemical properties.
- Equilibrium isotope shifts in NMR spectroscopy are sensitive to hydrogen bonding environments.
- Solvent effects significantly impact hydrogen bond strength and NMR chemical shifts.
Purpose of the Study:
- To investigate the influence of solvent polarity and hydrogen-bonding capability on equilibrium isotope shifts in partially deuterated diols.
- To elucidate the relationship between hydrogen bond geometry and the sign and magnitude of NMR isotope shifts.
- To explore the utility of different deuterated solvents for configurational assignment and hydrogen bond detection.
Main Methods:
- Comparative (1)H NMR spectroscopy of partially deuterated 1,3- and 1,4-diols.
- Utilizing various hydrogen-bond-accepting (DMSO-d(6), acetone-d(6), THF-d(8)) and apolar (CD(2)Cl(2), benzene-d(6)) deuterated solvents.
- Employing pyridine-d(5) as a solvent to amplify isotope shifts.
Main Results:
- Observed sign inversion of equilibrium isotope shifts in hydrogen-bond-accepting solvents, attributed to competitive intermolecular hydrogen bonding and limiting chemical shifts.
- Quantified deuterium's preference for intermolecular solvent hydrogen bonds (10.9 +/- 0.5 cal/mol in DMSO-d(6) for 1,4-diol).
- Demonstrated pyridine-d(5)'s ability to amplify positive isotope shifts (up to 3x) for configurational assignment (2,4-pentanediol) and detecting intramolecular hydrogen bonds (cyclodextrins).
- Identified negative (upfield) isotope shifts in apolar solvents, with larger shifts observed in benzene-d(6), useful for configurational analysis.
Conclusions:
- The geometry of intramolecular hydrogen bonds dictates the sign of equilibrium isotope shifts, modulated by solvent interactions.
- Deuterium exhibits a preference for forming intermolecular hydrogen bonds with solvent molecules.
- Deuterated pyridine and apolar solvents serve as valuable tools for NMR-based structural elucidation, including configurational assignment and the study of hydrogen bonding networks.
More Related Videos
10:28Probing the Structure and Dynamics of Interfacial Water with Scanning Tunneling Microscopy and Spectroscopy
Published on: May 27, 2018
11:38In situ FTIR Spectroscopy as a Tool for Investigation of Gas/Solid Interaction: Water-Enhanced CO2 Adsorption in UiO-66 Metal-Organic Framework
Published on: February 1, 2020
Related Concept Videos
Molecular Shapes
Strong Acid and Base Solutions
Common Ion Effect
Molecular Structure and Acidity
The size effect explains the change in atomic size on acidity. When comparing the acids formed from elements that belong to the same column in the periodic table, their atomic sizes...
Acidity and Basicity of Alcohols and Phenols
¹H NMR of Labile Protons: Temporal Resolution
The –OH proton in alcohols typically appears in the range of δ 2 to 5 ppm but can vary depending on the specific...