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Published on: November 2, 2017
The Dun1 checkpoint kinase phosphorylates and regulates the ribonucleotide reductase inhibitor Sml1
Xiaolan Zhao1, Rodney Rothstein
1Department of Genetics and Development, Columbia University, College of Physicians and Surgeons, 701 West 168th Street, New York, NY 10032-2704, USA.
Abstract:
Cell cycle checkpoints are evolutionarily conserved surveillance systems that protect genomic stability and prevent oncogenesis in mammals. One important target of checkpoint control is ribonucleotide reductase (RNR), which catalyzes the rate-limiting step in dNTP and DNA synthesis. In both yeast and humans, RNR is transcriptionally induced after DNA damage via Mec1/Rad53 (yeast) and ATM/CHK2 (human) checkpoint pathways. In addition, yeast checkpoint proteins Mec1 and Rad53 also regulate the RNR inhibitor Sml1. After DNA damage or at S phase, Mec1 and Rad53 control the phosphorylation and concomitant degradation of Sml1 protein. This new layer of control contributes to the increased dNTP production likely necessary for DNA repair and replication; however, the molecular mechanism is unclear. Here we show that Dun1, a downstream kinase of Mec1/Rad53, genetically and physically interacts with Sml1 in vivo. The absence of Dun1 activity leads to the accumulation of Sml1 protein at S phase and after DNA damage. As a result, dun1Delta strains need more time to finish DNA replication, are defective in mitochondrial DNA propagation, and are sensitive to DNA-damaging agents. Moreover, phospho-Sml1 is absent or dramatically reduced in dun1Delta cells. Finally, Dun1 can phosphorylate Sml1 in vitro. These results suggest that Dun1 kinase function is the last step required in the Mec1/Rad53 cascade to remove Sml1 during S phase and after DNA damage.
Insights
The Dun1 kinase phosphorylates and degrades the Sml1 protein, which is crucial for DNA replication and repair during cell cycle checkpoints. This regulation ensures genomic stability and prevents cancer.
Area of Science:
- Cellular biology
- Molecular genetics
- Biochemistry
Background:
- Cell cycle checkpoints are vital for maintaining genomic stability and preventing cancer.
- Ribonucleotide reductase (RNR) is essential for DNA synthesis and is regulated by checkpoint pathways.
- The RNR inhibitor Sml1 is regulated by Mec1/Rad53, but the mechanism remains unclear.
Purpose of the Study:
- To elucidate the molecular mechanism by which Mec1/Rad53 regulate Sml1.
- To investigate the role of Dun1 kinase in Sml1 regulation.
- To understand the impact of Dun1-mediated Sml1 regulation on DNA replication and repair.
Main Methods:
- Genetic analysis of yeast strains with mutations in Dun1 and Sml1.
- Co-immunoprecipitation to assess protein interactions.
- In vitro kinase assays to determine Dun1's enzymatic activity on Sml1.
Main Results:
- Dun1 genetically and physically interacts with Sml1.
- Absence of Dun1 leads to Sml1 accumulation, delayed DNA replication, and sensitivity to DNA damage.
- Dun1 directly phosphorylates Sml1 in vitro, and phospho-Sml1 is absent in dun1Delta cells.
Conclusions:
- Dun1 kinase is the final effector in the Mec1/Rad53 pathway for Sml1 degradation.
- Dun1-mediated Sml1 regulation is critical for DNA repair, replication, and genomic integrity.
- This study reveals a key regulatory step in the DNA damage response pathway.
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