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The binding database: overview and user's guide.

X Chen1, Y Lin, M K Gilson

  • 1Center for Advanced Research in Biotechnology, University of Maryland Biotechnology Institute, 9600 Gudelsky Drive, Rockville, MD 20850, USA.

Biopolymers
|May 3, 2002
PubMed
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BindingDB is a public database that centralizes molecular binding affinity data, making it accessible for research in biology and drug discovery. It facilitates data sharing and retrieval through various search criteria.

Area of Science:

  • Biochemistry
  • Pharmacology
  • Computational Chemistry

Background:

  • Experimental molecular binding data is crucial for various scientific applications.
  • This valuable data is often difficult to access, residing primarily in scientific journals.

Purpose of the Study:

  • To create a centralized, publicly accessible database for measured binding affinities.
  • To address the challenge of finding and accessing molecular binding data.

Main Methods:

  • BindingDB collects and curates binding affinity data from experimental measurements.
  • Currently supports isothermal titration calorimetry data; enzyme inhibition data integration is planned.
  • Provides detailed experimental information and allows data entry via online forms.

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Main Results:

  • BindingDB offers a web-accessible platform for molecular binding data.
  • Data can be searched by binding thermodynamics, sequence homology, and chemical structure.
  • Encourages experimentalists to contribute and update their data.

Conclusions:

  • BindingDB enhances the accessibility and utility of molecular binding data.
  • Facilitates drug discovery, molecular modeling, and functional assignment of biomolecules.
  • Promotes data sharing and user collaboration in molecular science.