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Updated: Sep 28, 2026

Application of Stopped-flow Kinetics Methods to Investigate the Mechanism of Action of a DNA Repair Protein
Published on: March 31, 2010
Vanadate inhibits the ATPase activity and DNA binding capability of bacterial MutS. A structural model for the
Roberto J Pezza1, Marcos A Villarreal, Guillermo G Montich
1Centro de Investigaciones en Química Biológica de Córdoba, UNC-CONICET, Departamento de Química Biológica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Ciudad Universitaria, Córdoba, Argentina.
Abstract:
MutS, a member of the ABC ATPases superfamily, is a mismatch DNA-binding protein constituent of the DNA post-replicative mismatch repair system (MMRS). In this work, it is shown that the ATPase activity of Pseudomonas aeruginosa and Escherichia coli MutS is inhibited by ortho- and decavanadate. Structural comparison of the region involved in the ATP binding of E.coli MutS with the corresponding region of other ABC ATPases inhibited by vanadate, including the myosin- orthovanadate-Mg complex, showed that they are highly similar. From these results it is proposed that the orthovanadate inhibition of MutS ATPase can take place by a similar mechanism to that described for other ATPases. Docking of decavanadate on the ATP-binding region of MutS showed that the energetically more favorable interaction of this compound would take place with the complex MutS- ADP-Mg, suggesting that the inhibitory effect could be produced by a steric impediment of the protein ATP/ADP exchange. Besides the effect observed on the ATPase activity, vanadate also affects the DNA-binding capability of the protein, and partially inhibits the oligomerization of MutS and the temperature-induced inactivation of the protein. From the results obtained, and considering that vanadate is an intracellular trace component, this compound could be considered as a new modulator of the MMRS.
Insights
Vanadate inhibits the DNA mismatch repair protein MutS by affecting its ATPase activity and DNA binding. This suggests vanadate could modulate the mismatch repair system (MMRS).
Area of Science:
- Biochemistry
- Molecular Biology
- Genetics
Background:
- MutS is a DNA mismatch-binding protein crucial for the DNA post-replicative mismatch repair system (MMRS).
- The ATPase activity of MutS is essential for its function in DNA repair.
Purpose of the Study:
- To investigate the effect of vanadate compounds on the function of MutS from Pseudomonas aeruginosa and Escherichia coli.
- To elucidate the mechanism of vanadate inhibition on MutS ATPase activity and DNA binding.
Main Methods:
- Biochemical assays to measure ATPase activity.
- Structural comparison of ATP-binding regions.
- Molecular docking simulations.
- Analysis of vanadate's effect on DNA binding, oligomerization, and thermal stability of MutS.
Main Results:
- Ortho- and decavanadate inhibited the ATPase activity of both P. aeruginosa and E. coli MutS.
- Structural similarities suggest vanadate inhibits MutS via a mechanism similar to other ABC ATPases.
- Decavanadate likely inhibits by sterically impeding ATP/ADP exchange.
- Vanadate also impaired MutS DNA-binding, oligomerization, and thermal stability.
Conclusions:
- Vanadate acts as an inhibitor of MutS ATPase activity and DNA binding.
- The findings suggest vanadate could be an intracellular modulator of the MMRS.
- Understanding vanadate's interaction with MutS provides insights into DNA repair mechanisms.
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