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Genome-Wide Analysis of DNA Methylation in Gastrointestinal Cancer
Published on: September 18, 2020
Mutation analysis of the putative tumor suppressor gene PTEN/MMAC1 in advanced gastric carcinomas
Jaw-Yuan Wang1, Tsung-Jen Huang, Fang-Ming Chen
1Department of Surgery, Kaohsiung Medical University and Hospital, Shih-Chuan 1st Road, No. 100, 807, Kaohsiung, Taiwan.
Abstract:
A novel tumor suppressor gene, PTEN/MMAC1, located on chromosome band 10q23.3, encodes a 403-amino acid, dual-specificity protein phosphatase. The defects in this gene are responsible for the development of some advanced cancers. Inactivating alterations, including mutations and deletions, in the PTEN/MMAC1 gene have been identified in several types of human cancers and cancer cell lines. To clarify the participation of the PTEN/MMAC1 gene in advanced gastric carcinogenesis, we screened their frequency of mutations in primary advanced gastric adenocarcinoma tissues. Cancer specimens and their corresponding normal tissues were obtained surgically from 60 patients with pathologically proven advanced gastric carcinoma at the Department of Surgery of Kaohsiung Medical University Hospital. All nine exons of the PTEN/MMAC1 gene were amplified using polymerase chain reaction and screened for mutations by single-strand conformation polymorphism analysis and followed by direct sequencing. After neutral polyacrylamide gel electrophoresis, 17 patients (28.3%) showed an apparent electrophoretic mobility shift between the cancer and its paired normal tissue. These results from direct sequencing indicated that mutations consisted of eight cases (47.1%) of missense mutation, five silent mutations (29.4%), two nonsense mutations (11.8%), a 12-bp deletion (5.9%), and a mutation within the splice donor site of intron 6 (5.9%). The mutation hot spots at codons 45, 66, 82 and 204 in advanced gastric cancer have not been observed previously. Based on the present analysis, our study implicated that the mutations of the PTEN/MMAC1 gene do not occur at a significant rate in human advanced gastric carcinoma, but the rare clustered mutation site (exons 2-6) perhaps suggested that PTEN/MMAC1 might contribute to the gastric carcinogenesis and its progression.
Insights
Mutations in the PTEN/MMAC1 gene, a tumor suppressor, were analyzed in advanced gastric cancer. While not frequent, specific mutation clusters suggest PTEN/MMAC1 may play a role in gastric cancer development.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- PTEN/MMAC1 is a novel tumor suppressor gene located on chromosome 10q23.3.
- Defects in PTEN/MMAC1 are linked to the development of advanced cancers.
- Inactivating alterations in PTEN/MMAC1 have been found in various human cancers.
Purpose of the Study:
- To investigate the frequency and types of PTEN/MMAC1 gene mutations in advanced gastric adenocarcinoma.
- To clarify the role of PTEN/MMAC1 in gastric carcinogenesis and progression.
Main Methods:
- Surgical specimens from 60 advanced gastric carcinoma patients were analyzed.
- All nine exons of the PTEN/MMAC1 gene were amplified using polymerase chain reaction.
- Mutations were screened using single-strand conformation polymorphism analysis and direct sequencing.
Main Results:
- Mutations were detected in 17 out of 60 patients (28.3%).
- Identified mutations included missense, silent, nonsense, a deletion, and a splice donor site mutation.
- Novel mutation hotspots were observed at codons 45, 66, 82, and 204.
Conclusions:
- PTEN/MMAC1 mutations occur at a low rate in human advanced gastric carcinoma.
- Rare clustered mutation sites in exons 2-6 suggest PTEN/MMAC1 may contribute to gastric carcinogenesis and progression.
