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Updated: Aug 15, 2026

Monitoring Cell-autonomous Circadian Clock Rhythms of Gene Expression Using Luciferase Bioluminescence Reporters
Published on: September 27, 2012
A novel C-terminal domain of drosophila PERIOD inhibits dCLOCK:CYCLE-mediated transcription
Dennis C Chang1, Steven M Reppert
1Department of Neurobiology, University of Massachusetts Medical Center, 364 Plantation Street, Worcester, MA 01605, USA.
Insights
The Drosophila circadian clock
Area of Science:
- Chronobiology
- Molecular Biology
- Genetics
Background:
- The Drosophila circadian clock relies on a negative feedback loop involving PERIOD (PER) and TIMELESS (TIM) proteins.
- PER and TIMELESS inhibit their own transcription by interacting with dCLOCK (dCLK) and CYCLE (CYC) transcriptional activators.
- The role of PAS domains in these interactions and the necessity of PER nuclear transport for clock function remain incompletely understood.
Purpose of the Study:
- To investigate the critical aspects of PER-mediated transcriptional inhibition in Drosophila.
- To functionally map the nuclear localization sequence (NLS) of PER and assess its role in nuclear transport and inhibitory activity.
- To identify the specific domain responsible for inhibiting dCLK:CYC activity.
Main Methods:
- Utilized Drosophila Schneider 2 (S2) cells for experimental analysis.
- Employed deletion mutants and site-directed mutagenesis to map PER's functional domains.
- Evaluated the impact of identified NLS on PER's nuclear transport and transcriptional inhibition.
Main Results:
- Mapped the dCLK:CYC inhibition domain (CCID) of PER to its C terminus, downstream of the PAS domain.
- Identified a novel NLS within the CCID of PER, crucial for its nuclear transport in S2 cells.
- Demonstrated that nuclear transport, mediated by this novel NLS, is essential for PER's inhibitory function.
Conclusions:
- PER inhibits dCLK:CYC-mediated transcription through a novel C-terminal domain.
- This domain contains a potent NLS that regulates PER's nuclear localization.
- Nuclear transport of PER is a critical regulatory step for the Drosophila circadian clock's negative feedback loop.
Abstract:
The essence of the Drosophila circadian clock involves an autoregulatory feedback loop in which PERIOD (PER) and TIMELESS (TIM) inhibit their own transcription by association with the transcriptional activators dCLOCK (dCLK) and CYCLE (CYC). Because PER, dCLK, and CYC each contain a PAS domain, it has been assumed that these interaction domains are important for negative feedback. However, a critical role for PAS-PAS interactions in Drosophila clock function has not been shown. Nuclear transport of PER is also believed to be an essential regulatory step for negative feedback, but this has not been directly tested, and the relevant nuclear localization sequence (NLS) has not been functionally mapped. We evaluated these critical aspects of PER-mediated transcriptional inhibition in Drosophila Schneider 2 (S2) cells. We mapped the dCLK:CYC inhibition domain (CCID) of PER and discovered that it lies in the C terminus, downstream of the PAS domain. Using deletion mutants and site-directed mutagenesis, we identified a novel NLS in the CCID of PER that is a potent regulator of PER's nuclear transport in S2 cells. We further found that nuclear transport, primarily through this novel NLS, is essential for the inhibitory activity of PER. The data indicate that nuclear PER inhibits dCLK:CYC-mediated transcription through a novel domain that additionally contains a potent NLS.
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