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Recombination in Mycoplasma hominis.
I Z Søgaard1, T Boesen, T Mygind
1Department of Genetics and Ecology, Bioinformatics Research Center (BIRC), University of Aarhus, Ny Munkegade, Building 540, DK-8000 Aarhus C, Denmark.
Summary
Mycoplasma hominis exhibits significant genetic diversity due to both intergenic and intragenic recombination. The glyceraldehyde-3-phosphate dehydrogenase (gap) gene showed high levels of recombination, contributing to this variability.
Area of Science:
- Microbiology
- Genetics
- Molecular Biology
Background:
- Mycoplasma hominis is recognized as a genetically diverse bacterial species.
- Understanding the genetic variability within M. hominis is crucial for population studies.
Purpose of the Study:
- To analyze the intraspecies diversity of Mycoplasma hominis isolates.
- To investigate the presence and extent of intergenic and intragenic recombination within M. hominis.
Main Methods:
- Sequencing of unlinked genes: gyrase B (gyrB), elongation factor Tu (tuf), SRalpha homolog (ftsY), hitB-hitL, excinuclease ABC subunit A (uvrA), and glyceraldehyde-3-phosphate dehydrogenase (gap).
- Phylogenetic tree reconstruction to assess intergenic recombination.
- Analysis of linkage disequilibrium, homoplasy ratio (H ratio), and compatibility matrices to detect intragenic recombination.
Main Results:
- Low gene variability was observed in M. hominis compared to other bacterial species like Helicobacter pylori and Neisseria meningitidis.
- Evidence of recombination was found, as few isolates shared identical sequences across all analyzed genes.
- The glyceraldehyde-3-phosphate dehydrogenase (gap) gene demonstrated significant evidence of high intragenic recombination.
- Recombination was less frequent and not statistically significant in other analyzed genes.
Conclusions:
- Both intergenic and intragenic recombination contribute to the observed high intraspecies variability in Mycoplasma hominis.
- The findings provide valuable insights for future population genetic studies of Mycoplasma species.