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Updated: Aug 12, 2026

Focus Formation: A Cell-based Assay to Determine the Oncogenic Potential of a Gene
Published on: December 31, 2014
DNA methyltransferase 3b contributes to oncogenic transformation induced by SV40T antigen and activated Ras
Kenzo Soejima1, Weizhao Fang, Barrett J Rollins
1Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02115, USA.
Abstract:
Transcriptional silencing of tumor suppressor genes in association with DNA methylation contributes to malignant transformation. However, the specific DNA methyltransferases that initiate this process are unknown. Here we show that a de novo DNA methyltransferase, DNMT3b, substantially contributes to the oncogenic phenotype in a lung cancer model. Normal human bronchial epithelial (NHBE) cells expressing telomerase, SV40 large T antigen, and activated Ras were immortal, formed colonies in soft agar, and expressed DNMT3b. Antisense suppression of DNMT3b prevented soft agar growth. Furthermore, mouse embryo fibroblasts expressing T antigen and Ras formed soft agar colonies and large tumors, but fibroblasts from Dnmt3b(-/-) mice did not grow in soft agar and were much less tumorigenic in vivo. The tumor suppressor genes, FHIT, TSLC1, and RASSF1A were downregulated in transformed NHBE cells, and antisense DNMT3b treatment resulted in re-expression of FHIT and TSLC1. While expression of TSCL1 correlated with methylation of CpG dinucleotides in its promoter region, the expression of FHIT did not, suggesting that DNMT3b may silence genes by several mechanisms including direct DNA methylation or recruitment of proteins that modify chromatin. Regardless of mechanism, our data indicate that DNMT3b plays an important role in transformation.
Insights
The DNA methyltransferase DNMT3b drives cancer development by silencing tumor suppressor genes. Inhibiting DNMT3b reduces tumor growth and reactivates silenced genes, offering a potential therapeutic target for lung cancer.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Transcriptional silencing of tumor suppressor genes via DNA methylation is crucial for cancer development.
- The specific DNA methyltransferases initiating this silencing are not fully understood.
Purpose of the Study:
- To investigate the role of de novo DNA methyltransferase DNMT3b in malignant transformation and lung cancer.
- To determine if DNMT3b contributes to the oncogenic phenotype and silences specific tumor suppressor genes.
Main Methods:
- Utilized normal human bronchial epithelial (NHBE) cells and mouse embryo fibroblasts (MEFs) engineered for transformation.
- Employed antisense suppression to inhibit DNMT3b expression.
- Assessed anchorage-independent growth (soft agar assay) and in vivo tumorigenicity.
- Analyzed the expression and promoter methylation status of tumor suppressor genes (FHIT, TSLC1, RASSF1A).
Main Results:
- DNMT3b expression was elevated in transformed NHBE cells.
- Antisense suppression of DNMT3b inhibited soft agar growth in transformed cells.
- Fibroblasts from Dnmt3b(-/-) mice exhibited significantly reduced tumorigenicity.
- DNMT3b inhibition led to re-expression of FHIT and TSLC1, with TSLC1 promoter methylation correlating with its silencing.
Conclusions:
- DNMT3b plays a significant role in malignant transformation and lung cancer development.
- DNMT3b contributes to the oncogenic phenotype, potentially through direct DNA methylation or chromatin modification.
- Targeting DNMT3b represents a potential therapeutic strategy for cancers driven by its activity.
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