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Updated: Aug 15, 2026

RNA Secondary Structure Prediction Using High-throughput SHAPE
Published on: May 31, 2013
[Search for conservative secondary structures of RNA]
K Iu Gorbunov1, A A Mironov, V A Liubetskiĭ
1Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, 101447 Russia. gorbunov@iitp.ru
Abstract:
We suggest a new algorithm to search a given set of the RNA sequences for conserved secondary structures. The algorithm is based on alignment of the sequences for potential helical strands. This procedure can be used to search for new structured RNAs and new regulatory elements. It is efficient for the genome-scale analysis. The results of various tests run with this algorithm are shown.
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