Related Experiment Video
Updated: Jul 29, 2026

11:36
In Vitro Ubiquitination and Deubiquitination Assays of Nucleosomal Histones
Published on: July 25, 2019
AIRE functions as an E3 ubiquitin ligase.
Daisuke Uchida1, Shigetsugu Hatakeyama, Akemi Matsushima
1Division of Molecular Immunology, Institute for Enzyme Research, University of Tokushima, 3-18-15 Kuramoto, Tokushima 770-8503, Japan.
The Journal of Experimental Medicine
|January 22, 2004
Summary
Autoimmune regulator (AIRE) gene mutations cause a rare autoimmune disease. AIRE
Area of Science:
- Immunology
- Molecular Biology
- Genetics
Background:
- Autoimmune regulator (AIRE) gene mutations lead to autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy.
- AIRE is crucial for establishing self-tolerance, primarily in thymus medullary epithelial cells.
- Plant homeodomain (PHD) domains are known protein interaction modules, with a newly emerging role in E3 ubiquitin ligase activity.
Purpose of the Study:
- To investigate the enzymatic function of AIRE's PHD domains.
- To determine if AIRE possesses E3 ubiquitin ligase activity.
- To elucidate the role of AIRE's E3 ligase activity in the context of autoimmune disease.
Main Methods:
- Site-directed mutagenesis to create specific mutations in AIRE's PHD1 domain.
- In vitro assays to assess E3 ubiquitin ligase activity.
- Analysis of disease-causing mutations (C311Y and P326Q) in the PHD1 domain.
Main Results:
- The first PHD domain (PHD1) of AIRE mediates E3 ligase activity.
- Disease-associated missense mutations in PHD1 (C311Y and P326Q) abrogate AIRE's E3 ligase function.
- AIRE exhibits a novel enzymatic function as an E3 ubiquitin ligase.
Conclusions:
- AIRE possesses intrinsic E3 ubiquitin ligase activity mediated by its PHD1 domain.
- The ubiquitin proteasome pathway is essential for self-tolerance, with AIRE playing a key role.
- Understanding AIRE's enzymatic function provides insights into autoimmune disease pathogenesis.
Related Concept Videos
The Proteasome
Eukaryotic cells can degrade proteins through several pathways. One of the most important amongst these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. A series of enzymes carry out the ubiquitination of the target proteins - E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3...
Regulated Protein Degradation
It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Receptor Downregulation in MVBs
Multivesicular bodies (MVBs) are mature endosomes that sort ubiquitinated proteins and then fuse with lysosomes to degrade the sorted proteins. Epidermal growth factor (EGF) and its receptor (EGFR) form a complex that can be internalized through endocytosis, sorted into an MVB, and later degraded.
The EGFR can initiate signaling pathways that lead to cell proliferation, migration, and differentiation. Overexpression of EGFR stimulates cells to proliferate. Excessive EGFR activation may...
The EGFR can initiate signaling pathways that lead to cell proliferation, migration, and differentiation. Overexpression of EGFR stimulates cells to proliferate. Excessive EGFR activation may...
Export of Misfolded Proteins out of the ER
After folding, the ER assesses the quality of secretory and membrane proteins. The correctly folded proteins are cleared by the calnexin cycle for transport to their final destination, while misfolded proteins are held back in the ER lumen. The ER chaperones attempt to unfold and refold the misfolded proteins but sometimes fail to achieve the correct native conformation. Such terminally misfolded proteins are then exported to the cytosol by ER-associated degradation or ERAD pathway for...
Regulated Protein Degradation
It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
The Proteasome
Eukaryotic cells can degrade proteins through several pathways. One of the most important among these is the ubiquitin-proteasome pathway. It helps the cell eliminate the misfolded, damaged, or unwarranted cytoplasmic proteins in a highly specific manner.
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...
In this pathway, the target proteins are first tagged with small proteins called ubiquitin. This involves participation of a series of enzymes including— E1 (ubiquitin-activating enzyme), E2 (ubiquitin-conjugating enzyme), and E3 (ubiquitin...

