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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
A codon 31ser-arg polymorphism of the WAF-1/CIP-1/p21/tumour suppressor gene in Chinese primary open-angle glaucoma
Fuu-Jen Tsai1, Hui-Ju Lin, Wen-Chi Chen
1Department of Medical Genetics and Paediatrics, China Medical University Hospital, Taichung, Taiwan.
Purpose:
Glaucomatous neuropathy is a type of cell death by apoptosis. Apoptosis is a genetically controlled form of cell death, and one of its primary regulatory steps is the activation of the tumour suppressor protein p53, of which p21 is an effector protein. The association between p21 codon 31 polymorphism and primary open-angle glaucoma (POAG) patients was evaluated in this study.
Methods:
The study included 58 POAG patients and a control group of 59 healthy volunteers. Polymerase chain reaction-based analysis was used to resolve the p21 codon 31 polymorphism.
Results:
The genotype frequencies of p21 codon 31 polymorphism were statistically different (p < 0.05) between the two groups. The Arg allele of the p21 codon 31 polymorphism was more frequently found in POAG patients than in healthy individuals (odds ratio: 2.389, 95% confidence interval: 1.14-5.01).
Conclusion:
This study suggests that an association exists between the Arg allele of the p21 codon 31 polymorphism and POAG in the Chinese population.
Insights
The Arg allele of the p21 codon 31 polymorphism is more common in primary open-angle glaucoma (POAG) patients. This finding suggests a genetic link between this specific p21 gene variation and POAG in the Chinese population.
Area of Science:
- Genetics
- Ophthalmology
- Molecular Biology
Background:
- Glaucomatous neuropathy involves apoptosis, a programmed cell death.
- Tumor suppressor protein p53 and its effector p21 are key regulators of apoptosis.
- Understanding genetic factors in glaucoma is crucial for early detection and treatment.
Purpose of the Study:
- To investigate the association between p21 codon 31 polymorphism and primary open-angle glaucoma (POAG).
- To determine if specific p21 genotypes are risk factors for POAG in the Chinese population.
Main Methods:
- Genotype analysis of p21 codon 31 polymorphism using polymerase chain reaction (PCR).
- Comparison of genotype frequencies between 58 POAG patients and 59 healthy controls.
Main Results:
- Statistically significant differences in p21 codon 31 genotype frequencies were observed between POAG patients and controls (p < 0.05).
- The Arg allele of the p21 codon 31 polymorphism was found more frequently in POAG patients (OR: 2.389, 95% CI: 1.14-5.01).
Conclusions:
- The Arg allele of the p21 codon 31 polymorphism is associated with an increased risk of POAG.
- This genetic variation may play a role in the pathogenesis of POAG in the studied Chinese population.
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