Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

CHROMINFO: a database for viewing and editing top-level chromosome data.

P M Nadkarni1, S T Reeders, M A Shifman

  • 1Dept. of Anesthesiology, Yale University School of Medicine, New Haven, CT 06510.

Proceedings. Symposium on Computer Applications in Medical Care
|January 1, 1992
PubMed
Summary

CHROMINFO is a novel database designed to unify chromosome mapping data from multiple research centers. This tool facilitates collaborative research by organizing gene loci, breakpoints, and contigs along a chromosome

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Medical Informatics Training at Yale University School of Medicine.

Yearbook of medical informatics·2016
Same author

ATTENDING: Critiquing a Physician's Management Plan.

IEEE transactions on pattern analysis and machine intelligence·2011
Same author

The Common Data Elements for cancer research: remarks on functions and structure.

Methods of information in medicine·2006
Same author

Automating identification of adverse events related to abnormal lab results using standard vocabularies.

AMIA ... Annual Symposium proceedings. AMIA Symposium·2006
Same author

Metadata driven generation of reports for clinical studies.

AMIA ... Annual Symposium proceedings. AMIA Symposium·2006
Same author

Integration of Web-based and PC-based clinical research databases.

Methods of information in medicine·2004

Area of Science:

  • Genomics
  • Bioinformatics
  • Computational Biology

Background:

  • Chromosome mapping is a complex process often involving multiple research centers.
  • Data integration and standardization across different research groups are significant challenges in genomics.

Purpose of the Study:

  • To develop a prototype database, CHROMINFO, serving as a liaison tool for researchers mapping the same mammalian chromosome.
  • To provide a unified, one-dimensional view of chromosome entities and their relationships.

Main Methods:

  • Developed a prototype database (CHROMINFO) for managing chromosome mapping data.
  • Incorporated features for entering, editing, querying, and displaying consensus data.
  • Integrated periodic data downloads from the Genome Data Base, including order and distance information.

Related Experiment Videos

Main Results:

  • CHROMINFO provides a bird's-eye-view of top-level entities on a chromosome axis.
  • The database supports storage and retrieval of summary evidence for consensus data.
  • The prototype was initially built for human chromosome 16, with versions extended to other chromosomes.

Conclusions:

  • CHROMINFO serves as an effective liaison tool for collaborative chromosome mapping efforts.
  • The database facilitates data integration and visualization for researchers working on mammalian chromosome mapping.
  • The prototype demonstrates the feasibility of a centralized system for consolidating dispersed genomic data.