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Determination of fluid--solid transitions in model protein solutions using the histogram reweighting method and
Jaeeon Chang1, Abraham M Lenhoff, Stanley I Sandler
1Center for Molecular and Engineering Thermodynamics, Department of Chemical Engineering, University of Delaware, Newark, Delaware 19716, USA.
The Journal of Chemical Physics
|July 23, 2004
Summary
Computer simulations reveal protein crystallization behavior. Anisotropic interactions drive the formation of diverse crystal structures, including simple cubic and face-centered-cubic phases, creating a detailed phase diagram.
Area of Science:
- Computational physics
- Biophysics
- Materials science
Background:
- Protein crystallization is complex and typically relies on empirical screening.
- Understanding crystallization is crucial for protein structure determination and drug development.
- Nonequilibrium phases and polymorphism complicate predicting crystal formation.
Purpose of the Study:
- To investigate protein crystallization using a computational model.
- To explore the influence of anisotropic interactions on crystal structure.
- To construct a phase diagram for a model protein system.
Main Methods:
- Utilized a model protein composed of spheres with isotropic and anisotropic interactions.
- Employed expanded ensemble simulations of the Einstein crystal to calculate free energy.
- Applied NpT-Monte Carlo simulations with histogram reweighting for fluid-solid coexistence determination.
Main Results:
- Identified a stable simple cubic structure near room temperature and a disordered face-centered-cubic structure at higher temperatures.
- Observed a metastable first-order transition between disordered and ordered face-centered-cubic structures at low temperatures.
- Generated a complete phase diagram for a six-patch protein model, including fluid, three solid phases, and two triple points.
Conclusions:
- Anisotropic interactions significantly influence protein crystal structure and stability.
- The computational model successfully predicts multiple crystal phases and phase transitions.
- The study provides a framework for understanding and potentially controlling protein crystallization through molecular design.