Related Experiment Video
Updated: Jul 16, 2026

Comparing the Affinity of GTPase-binding Proteins using Competition Assays
Published on: October 8, 2015
Guanidinium groups act as general-acid catalysts in phosphoryl transfer reactions: a two-proton inventory on a model
Anna M Piatek1, Mark Gray, Eric V Anslyn
1Department of Chemistry and Biochemistry, The University of Texas at Austin, Austin, Texas 78712, USA.
Abstract:
Cleavage/transesterification of phosphodiesters is catalyzed by various acidic groups in solution and with enzymes. General-acid catalysts can transfer protons to the developing phosphorane intermediate, resulting in a monoprotic-monoanionic intermediate, giving the so-called "triester mechanism". Using a proton inventory on a model compound (1) possessing an intramolecular hydrogen bond between a phosphodiester and a guanidinium group, we find that two protons move in the rate-determining step for cleavage/transesterification. In contrast, HPNP shows a single-proton inventory and is a substrate well accepted to react with the movement of only one proton at the transition state. We therefore propose a mechanism for 1 that involves general-acid catalysis by the guanidinium group. This leads one to conclude that other, more acidic groups, such as ammonium and imidazolium, would also act as general-acid catalysts.
Related Concept Videos
GTPases and their Regulation
Large G-proteins, also known...
Directionality of Nuclear Transport
Activation and Inactivation of G Proteins
Ligand-Gated Ion Channel Receptor: Gating Mechanism
EDTA: Auxiliary Complexing Reagents
Ion Exchange

