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Updated: Aug 23, 2026

Detection of a CDH1 Rare Transcript Variant in Fresh-frozen Gastric Cancer Tissues by Chip-based Digital PCR
Published on: February 5, 2018
The unsolved enigma of CDH1 down-regulation in hereditary diffuse gastric cancer
Paola Concolino1, Valerio Papa, Simona Mozzetti
1Laboratory of Antineoplastic Pharmacology, Università Cattolica Sacro Cuore, Rome, Italy.
Background:
Hereditary diffuse gastric cancer (HDGC) is a disease mediated by down-regulation of the tumor suppressor E-cadherin (CDH1). This disease is particularly dangerous because of the youth of the patients, and for clinical management, hampered by the submucosal spread of tumor invisible at endoscopy. Two mechanisms of CDH1 down-regulation have been described in HDGC: missense mutations in the CDH1 gene and gene silencing through promoter methylation.
Materials And Methods:
Seven patients affected by HDGC were enrolled. Tumor tissues were checked for CDH1 expression by immunohistochemistry (IHC). CDH1 DNA sequencing was performed for all its 16 exons from tumor and normal tissues of the same patients to detect somatic and germ-line mutations. Methylation promoter study was performed using specific primers and PCR.
Results:
IHC analysis confirmed CDH1 down-regulation in all patients. DNA sequencing revealed the presence of six missense mutations in five patients. Four mutations were at the EC-3 domain of CDH1, whereas the other two were found in the cytoplasmic region interacting with catenins. All six mutations were absent in normal tissue, thereby excluding its presence in germ-line cells. Four patients exhibited both DNA missense mutations and gene silencing through promoter methylation. In two patients we did not notice either DNA missense mutations or promoter methylation.
Conclusion:
CDH1 somatic mutations and promoter methylation synergistically induce CDH1 down-regulation in HDGC patients, whereas germ-line mutations are relatively rare. However, other unknown mechanisms of CDH1 suppression are involved to explain CDH1 down-regulation in HDGC patients without CDH1 mutations and promoter methylation.
Insights
Somatic mutations and promoter methylation in the CDH1 gene work together to cause hereditary diffuse gastric cancer (HDGC). Germ-line mutations are rare, and other mechanisms may also contribute to CDH1 down-regulation in HDGC.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- Hereditary diffuse gastric cancer (HDGC) is characterized by E-cadherin (CDH1) down-regulation.
- HDGC poses significant clinical challenges due to early patient onset and submucosal tumor spread.
- Known mechanisms of CDH1 down-regulation include gene mutations and promoter methylation.
Purpose of the Study:
- To investigate the mechanisms of CDH1 down-regulation in HDGC patients.
- To identify the roles of somatic mutations and promoter methylation in HDGC pathogenesis.
Main Methods:
- Immunohistochemistry (IHC) to assess CDH1 expression in tumor tissues.
- DNA sequencing of the CDH1 gene to detect somatic and germ-line mutations.
- Analysis of CDH1 promoter methylation using PCR.
Main Results:
- CDH1 down-regulation was confirmed in all seven HDGC patients via IHC.
- Six missense CDH1 mutations were identified in five patients, all somatic (not germ-line).
- Four patients showed both CDH1 somatic mutations and promoter methylation; two patients had neither.
Conclusions:
- CDH1 somatic mutations and promoter methylation act synergistically to down-regulate CDH1 in HDGC.
- Germ-line CDH1 mutations are infrequent causes of HDGC.
- Additional, unidentified mechanisms contribute to CDH1 suppression in a subset of HDGC patients.
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