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Use of Alu Element Containing Minigenes to Analyze Circular RNAs
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Retrotransposition of Alu elements: how many sources?
Richard Cordaux1, Dale J Hedges, Mark A Batzer
1Department of Biological Sciences, Biological Computation and Visualization Center, Louisiana State University, Baton Rouge, LA 70803, USA.
Trends in Genetics : TIG
|September 15, 2004
Summary
Recently integrated human-specific Alu elements reveal multiple active sources, challenging the
Area of Science:
- Genomics
- Molecular Biology
- Evolutionary Biology
Background:
- Alu elements are abundant repetitive DNA sequences in the human genome.
- Previous understanding suggested limited 'master' Alu elements drive retrotransposition, producing mostly inactive copies.
Purpose of the Study:
- To investigate the number and contribution of active source elements for recently integrated human-specific Alu subfamilies.
- To re-evaluate the amplification strategy of the Alu family.
Main Methods:
- Utilized a network phylogenetic approach.
- Analyzed recently integrated human-specific Alu subfamilies.
Main Results:
- Demonstrated that 10-20% of secondary source elements contribute to recently integrated Alu subfamilies.
- Showed these multiple sources account for 20-40% of all subfamily members.
Conclusions:
- Challenges the notion of a few 'master' Alu sources.
- Highlights the significance of multiple active source elements in Alu amplification.
- Provides new insights into the evolutionary success of the Alu family.
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