Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Model Approaches for Pharmacokinetic Data: Compartment Models01:14

Model Approaches for Pharmacokinetic Data: Compartment Models

Compartmental analysis is a widely adopted approach to characterizing drug pharmacokinetics. It uses compartment models that conceptualize the body as a collection of reversibly communicating compartments, each representing a group of tissues exhibiting similar drug distribution characteristics. The movement rate of the drug between these compartments is typically described by first-order kinetics.
Two primary types of compartment models are recognized: mammillary and catenary. The more...
One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation01:24

One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation

This lesson introduces two critical methods in pharmacokinetics, the Wagner-Nelson and Loo-Riegelman methods, used for estimating the absorption rate constant (ka) for drugs administered via non-intravenous routes. The Wagner-Nelson method relates ka to the plasma concentration derived from the slope of a semilog percent unabsorbed time plot. However, it is limited to drugs with one-compartment kinetics and can be impacted by factors like gastrointestinal motility or enzymatic degradation.
On...
Mechanistic Models: Compartment Models in Individual and Population Analysis01:23

Mechanistic Models: Compartment Models in Individual and Population Analysis

Mechanistic models are utilized in individual analysis using single-source data, but imperfections arise due to data collection errors, preventing perfect prediction of observed data. The mathematical equation involves known values (Xi), observed concentrations (Ci), measurement errors (εi), model parameters (ϕj), and the related function (ƒi) for i number of values. Different least-squares metrics quantify differences between predicted and observed values. The ordinary least squares (OLS)...
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
Model Approaches for Pharmacokinetic Data: Distributed Parameter Models01:06

Model Approaches for Pharmacokinetic Data: Distributed Parameter Models

Pharmacokinetic models are mathematical constructs that represent and predict the time course of drug concentrations in the body, providing meaningful pharmacokinetic parameters. These models are categorized into compartment, physiological, and distributed parameter models.
The distributed parameter models are specifically designed to account for variations and differences in some drug classes. This model is particularly useful for assessing regional concentrations of anticancer or...
Growth Models with Integration: Problem Solving01:27

Growth Models with Integration: Problem Solving

In population modeling, integration provides a systematic way to determine accumulated quantities from known rates of change. One such application arises in ecology, where the total weight of a fish population in a body of water is referred to as its biomass. When the rate of growth of this biomass is known as a function of time, calculus can be used to determine the total biomass at a future date.Growth Rate and Biomass FunctionLet the growth rate of the fish population be represented by a...

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Dietary contribution of essential elements from honey consumed in the United States.

Food research international (Ottawa, Ont.)·2025
Same author

Color Change in Commercial Resin Composites with Different Photoinitiators.

Bioengineering (Basel, Switzerland)·2025
Same author

Notes from the Field: Severe Health Outcomes Linked to Consumption of Mushroom-Based Psychoactive Microdosing Products - Arizona, June-October 2024.

MMWR. Morbidity and mortality weekly report·2025
Same author

MOTHER-DB: A Database for Sharing Nonhuman Ovarian Histology Images.

IEEE/ACM transactions on computational biology and bioinformatics·2024
Same author

Overview of the Multispecies Ovary Tissue Histology Electronic Repository†.

Biology of reproduction·2024
Same author

Electrochemical Properties of Nickel-Titanium Rotary Endodontic Instruments.

Journal of endodontics·2024

Related Experiment Video

Updated: Jul 13, 2026

Laboratory Estimation of Net Trophic Transfer Efficiencies of PCB Congeners to Lake Trout (Salvelinus namaycush) from Its Prey
12:24

Laboratory Estimation of Net Trophic Transfer Efficiencies of PCB Congeners to Lake Trout (Salvelinus namaycush) from Its Prey

Published on: August 29, 2014

A bayesian approach to parameter estimation for a crayfish (Procambarus spp.) bioaccumulation model.

Hsin-I Lin1, David W Berzins, Leann Myers

  • 1Department of Environmental Health Sciences, Tulane University School of Public Health and Tropical Medicine, New Orleans, Louisiana 70112, USA.

Environmental Toxicology and Chemistry
|September 24, 2004
PubMed
Summary

This study introduces a Bayesian approach to bioaccumulation modeling for crayfish, incorporating uncertainty and variability. This method provides more realistic predictions of chemical concentrations, like chrysene, in aquatic organisms.

More Related Videos

Continuous Noninvasive Measuring of Crayfish Cardiac and Behavioral Activities
06:57

Continuous Noninvasive Measuring of Crayfish Cardiac and Behavioral Activities

Published on: February 6, 2019

Modeling the Size Spectrum for Macroinvertebrates and Fishes in Stream Ecosystems
07:41

Modeling the Size Spectrum for Macroinvertebrates and Fishes in Stream Ecosystems

Published on: July 30, 2019

Related Experiment Videos

Last Updated: Jul 13, 2026

Laboratory Estimation of Net Trophic Transfer Efficiencies of PCB Congeners to Lake Trout (Salvelinus namaycush) from Its Prey
12:24

Laboratory Estimation of Net Trophic Transfer Efficiencies of PCB Congeners to Lake Trout (Salvelinus namaycush) from Its Prey

Published on: August 29, 2014

Continuous Noninvasive Measuring of Crayfish Cardiac and Behavioral Activities
06:57

Continuous Noninvasive Measuring of Crayfish Cardiac and Behavioral Activities

Published on: February 6, 2019

Modeling the Size Spectrum for Macroinvertebrates and Fishes in Stream Ecosystems
07:41

Modeling the Size Spectrum for Macroinvertebrates and Fishes in Stream Ecosystems

Published on: July 30, 2019

Area of Science:

  • Environmental toxicology
  • Ecological risk assessment
  • Computational toxicology

Background:

  • Traditional bioaccumulation models use average parameter values, ignoring uncertainty and variability in predictions.
  • Probabilistic methods, like Bayesian analysis, are recommended by the U.S. Environmental Protection Agency for quantifying uncertainty in ecological and human health risk estimates.

Purpose of the Study:

  • To apply a Bayesian analysis to a crayfish bioaccumulation model, integrating uncertainty and variability of model parameters.
  • To predict the distribution of chrysene concentration over time in crayfish from the LaBranche Wetlands.

Main Methods:

  • A Bayesian analysis was performed using Markov chain Monte Carlo (MCMC) simulation.
  • Experimental data on polycyclic aromatic hydrocarbon concentrations and lipid fractions in crayfish after a 5-day exposure were utilized.
  • Posterior distributions of model parameters were derived from joint posterior distributions and experimental data.

Main Results:

  • The Bayesian approach successfully accounted for combined uncertainty and variability in the crayfish bioaccumulation model parameters.
  • Predicted ranges of chrysene concentration versus time were generated for crayfish at different study sites.
  • This probabilistic approach offers a more comprehensive understanding of chemical uptake dynamics.

Conclusions:

  • Bayesian analysis provides a robust framework for bioaccumulation modeling, improving the accuracy of ecological risk assessments.
  • The study demonstrates the utility of probabilistic methods in ecological hazard evaluations.
  • This approach enhances the prediction of chemical contaminant levels in aquatic organisms.