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Pharmacophore Modeling for Targets with Extensive Ligand Libraries: A Case Study on SARS-CoV-2 Mpro
Published on: September 26, 2025
[Using distance comparison method to build pharmacophore model of epidermal growth factor receptor inhibitors]
Yan-shen Guo1, Feng-ming Chu, Zong-ru Guo
1Department of Drug Synthesis, Institute of Materia Medica, CAMS and PUMC, Beijing 100050, China.
Objective:
To build 3D-pharmacophore model of epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors using distance comparisons method and design novel EGFR inhibitors.
Methods:
Thirteen typical EGFR inhibitors were selected, and their biologically active conformations were obtained by using DOCK5.0 program, then 3D-pharmacophore model of EGFR inhibitors was built using distance comparisons method.
Results:
Validation of the 3D-pharmacophore model was carried out and novel structures with potential inhibitory activity were selected by means of 3D-searching and docking method.
Conclusion:
This method can improve hit rate of lead compounds discovery and can be used to design novel EGFR inhibitors.
